[Genome] UCSC Broswer installation

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G, Chittybabu

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Sep 10, 2008, 2:55:13 AM9/10/08
to gen...@soe.ucsc.edu
Hi All,

We are planning to have local installation of UCSC Browser. We need few clarification on the points mentioned below:
A) Is genome graphs part of the installation available ?
B) Is there a way to invoke genome graphs as URL invocation (similar to UCSC browser custom tracks URL initiation i.e., http://genome.ucsc.edu/cgi-bin/hgTracks?org=human&position=chr22&hgt.customText=http://genome.ucsc.edu/goldenPath/help/test.bed)

Thanks a lot in advance.

Thanks and regards,
Chittybabu G

Kayla Smith

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Sep 10, 2008, 6:39:24 PM9/10/08
to G, Chittybabu, gen...@soe.ucsc.edu

Hello Chittybabu,


A) Yes, Genome Graphs is part of the installation.

You may also be interested in joining the genome-mirror mailinglist:
http://www.soe.ucsc.edu/mailman/listinfo/genome-mirror

And here is a FAQ on mirroring/licensing the Genome Browser:
http://genome.ucsc.edu/FAQ/FAQlicense#license3

B) You can save a session, using the hgSession tool, and construct a
link similar to this one:
http://genome.ucsc.edu/cgi-bin/hgGenome?hgS_doOtherUser=submit&hgS_otherUserName=Kayla&hgS_otherUserSessionName=kayla%2Dtest%2DGG

I hope this information is helpful to you. Please don't hesitate to
contact us again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group
> _______________________________________________
> Genome maillist - Gen...@soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome

G, Chittybabu

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Sep 11, 2008, 2:48:14 AM9/11/08
to Kayla Smith, gen...@soe.ucsc.edu
Hi Kayla Smith,

Thanks a lot for the response, I shall get back in case of any further assistance required.
Really thankful for the assistance provided.

Thanks and regards,
Chittybabu G

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