Request for chain files

[Baiwei Lo]

Dear UCSC,

Is it possible to generate chain files between dog and pig genomes
(canFam6 and susScr11)?

Many thanks,
Baiwei

--
Baiwei Lo, MD, MSc
PhD candidate
Mundlos Lab -⁠ Development and Disease
Max Planck Institute for Molecular Genetics
Ihnestr. 63-⁠⁠73
D-⁠⁠14195 Berlin, Germany

[Matthew Speir]

Hello, Baiwei.

Thank you for your request for LiftOver files. 

These files are now available here:

  https://hgdownload.soe.ucsc.edu/goldenPath/canFam6/liftOver/canFam6ToSusScr11.over.chain.gz
  https://hgdownload.soe.ucsc.edu/goldenPath/susScr11/liftOver/susScr11ToCanFam6.over.chain.gz

Chain coverage (% of genome covered by alignments):
  canFam6 -> susScr11: 62.509%
  susScr11 -> canFam6: 58.506%

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

---

Matthew Speir

UCSC Genome Browser, User Support

--

---
You received this message because you are subscribed to the Google Groups "UCSC Genome Browser Public Support" group.
To unsubscribe from this group and stop receiving emails from it, send an email to genome+un...@soe.ucsc.edu.
To view this discussion visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome/5f20c902a9e39711c556f3972c74b811%40molgen.mpg.de.