Hi,
I am one of the Clinical Analysts at the Division of Genomic Diagnostics and also responsible for clinical pipeline operations involving SNP Arrays. I am trying to download an updated version of the genome annotation file called refSeqSummary.txt for the hg19 Human build and I cannot seem to find it on the Genome Browser annotation data page. The file is used in the illumina GenomeStudio software to display gene information like function or disease linkage. I have attached an excerpt of an older version of the file I have that works with the software and I am looking to update the annotations to their current form. Any information would be greatly appreciated. Thank you.
Best,
Adam Gleason
Tech Specialist II
Division of Genomic Diagnostics - SNP Array Core
3615 Civic Center Blvd
Abramson Research Center, 715G
Philadelphia, PA 19104
phone: 215-590-3885
Dear Adam,
Thank you for using the UCSC Genome Browser and your question about the location of our refSeqSummary file.
The refSeqSummary table has recently moved to a shared database called hgFixed. Please see this page for more information:
https://genome.ucsc.edu/FAQ/FAQdownloads.html#download35
Thank you again for your inquiry and using the UCSC Genome Browser. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Jairo Navarro
UCSC Genomics Institute
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