Query regarding miRNA Expression Status

[Shrinka Sen]

Hello

         I have a question regarding miRNA expression data. For example, I have information that hsa-miR-383-5p is downregulated in Ovarian Cancer cells.

I want to know what is the status of this particular miRNA across all other tissues (whatever is available in the database).

 

Eagerly waiting for your reply.

 

Thanks

Shrinka Sen, Ph.D.

shrinka....@gmail.com
+919432340510

[Luis Nassar]

Hi, Shrinka.

Here is a session that looks at the miRNA with the miRNA Tissue Atlas and microRNAome tracks visible: https://genome.ucsc.edu/s/Lou/RM36914

It also has the GTEx tissue track on, which is overall tissue expression - perhaps not as useful to you.

You can use the Track Search feature, accessible as a button below the tracks display or via menu Genome Browser -> Track Search to look for specific datasets, e.g. miRNA or expression.

For your specific question, however, I believe the two I referenced above will be the most helpful.

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Lou Nassar
UCSC Genomics Institute