Dear UCSC
We have a track hub set up for the GUDMAP project at
http://www.gudmap.org/Gudmap/ngsData/gudmap_ucsc_hub/hub.txt
Until recently it has been functioning fine, but now we see this error when trying to load it.
ERROR: Unsupported type '13156_CM4G.bam' in hub
http://www.gudmap.org/Gudmap/ngsData/gudmap_ucsc_hub/hub.txt genome mm9 track 13156_CM4G
Running hubCheck gives:
./hubCheck.exe hub.txt
Found 2 problems:
Unsupported type '13156_CM4G.bam' in hub hub.txt genome mm9 track 13156_CM4G
Unsupported type '21814_accepted_hits.bam' in hub hub.txt genome mm10 track E14_5_DRG_(10ng,_high_volume)
The directories that hold those BAM files contain index (.bai) files and they are accessible. The site documentation still says BAM is supported. Can you advise on what might be happening here and how to resolve?
Many thanks
--
Simon D. Harding, PhD.
MRC HGU
MRC IGMM at University of Edinburgh
Crewe Road, EDINBURGH, EH4 2XU
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The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.