bigBedToBed

[Liu, Pengyuan]

Dear Sir/Madam:

 

I tried to convert bigBed to Bed. I download bigBedToBed in http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/.

 

I entered “chomd +x bigBedToBed ” and entered ./ bigBedToBed  in my linux, and got the following error message:

 

./bigBedToBed

 

Segmentation fault (core dumped)

 

Is this error associated with the linux system or I have to input parameters (what parameters should I input)?

 

Thank you very much for your help,

 

Pengyuan

 

Medical College of WI

[Sergei Manakov]

Dear Pengyuan,

if you google your error message, typically you find relevant
information, which sometimes can be useful to understand the problem.

For example, here is two of the links that come up for "Segmentation
fault (core dumped)":

http://www.faqs.org/qa/qa-673.html

http://cboard.cprogramming.com/cplusplus-programming/129382-how-fix-segmentation-fault-core-dumped.html

As you can see, this issue is not necessarily specific to a program
that you are trying to run.

S.

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Sergei (Siarhei Manakou) Manakov

California Institute of Technology
MC 147-75

land: +1 626 395 3593

mobile: + 1 858 729 4531

[Steve Heitner]

Hello, Pengyuan.

Please run the following commands and send us the output:

uname -a
gcc -v

Please contact us again at gen...@soe.ucsc.edu if you have any further questions.

---
Steve Heitner
UCSC Genome Bioinformatics Group

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