moving between hg36 and hg37 versions

[Ruti Parvari]

Please help me,

I have the positions:

Chr18:43,484,054-72,498,703

on the hg18 assembly, how do I find the corresponding position on the hg19 assembly?

Thanks much,

Ruti 

Ruti Parvari Ph.D.
Professor
The Shraga Segal Department of Microbiology, Immunology and  Genetics.
Faculty of Health Sciences,
Ben Gurion University of the Negev
P.O.B. 653 Beer Sheva 84105
Israel
Tl. 972-8-6479967
Fax 972-8-6276215
e mail: ru...@bgu.ac.il‎

[Pauline Fujita]

Hello Ruti,

You can use our liftover tool to convert coordinates between
assemblies. You will find the tool here:

https://genome.ucsc.edu/cgi-bin/hgLiftOver

(also accessible by clicking the "utilities" menu on the left,
followed by the "batch coordinate conversion" link)

Note that your coordinates will need to be in BED or chrN:start-end
(i.e. chr18:43484054-72498703) formats. For more info on BED format
see this help doc: https://genome.ucsc.edu/FAQ/FAQformat.html#format1

If you are looking at a coordinate within a browser (i.e. you're
looking at Chr18:43,484,054-72,498,703 in the hg18 browser) you can
also jump to the corresponding location in another browser - i.e. hg19
by clicking on the "View" menu in the top bar, and selecting "In Other
Genomes (Convert)"

If you have further questions please feel free to contact the mailing
list again at gen...@soe.ucsc.edu.

Best regards,

Pauline Fujita
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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