Request for chain files - GCF_023653815.1 to GCA_030012505.1
OFUJI Kokoro
Dear UCSC Genome Browser Team,
My name is Kokoro Ofuji. I am a graduate student at Kyushu University in Japan and conducting research on the molecular evolution of sea turtles. Thank you for providing us with very useful databases.
In my project, I need to compare genomes between sea turtle species, but one doesn’t have reliable annotation yet. I was wondering if you could create the chain. Especially, I’d like to use the chain file for Caretta caretta (GCF_023653815.1) -> Eretmochelys imbricata (GCA_030012505.1).
Thank you for your time and I look forward to hearing from you.
Best regards,
Ofuji Kokoro
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OFUJI Kokoro
Departure of Biology, Faculty of Science, Kyushu University
Email ofuji.ko...@s.kyushu-u.ac.jp
Gerardo Perez
Hello, Ofuji.
Thank you for your interest in the Genome Browser.
We are currently working on generating a chain file for GCF_023653815.1 to GCA_030012505.1. We will follow up with you when the file is ready.
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Gerardo Perez
UCSC Genomics Institute
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Gerardo Perez
Hello, Ofuji.
We wanted to follow up and let you know that we have generated the GCF_023653815.1 to GCA_030012505.1 liftOver chain file:
GCF_023653815.1 -> GCA_030012505.1: https://hgdownload.soe.ucsc.edu/hubs/GCF/023/653/815/GCF_023653815.1/liftOver/GCF_023653815.1ToGCA_030012505.1.over.chain.gz
GCA_030012505.1 -> GCF_023653815.1: https://hgdownload.soe.ucsc.edu/hubs/GCA/030/012/505/GCA_030012505.1/liftOver/GCA_030012505.1ToGCF_023653815.1.over.chain.gz
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Gerardo Perez
UCSC Genomics Institute