Hi,
I am finding below error in getting KnownGenes information as mentioned in http://genomewiki.ucsc.edu/index.php/Genes_in_gtf_or_gff_format
./genePredToGtf rheMac8 knownGene knownGene.gtf
Can't start query:
select * from knownGene
mySQL error 1146: Table 'rheMac8.knownGene' doesn't exist (profile=<noProfile>, host=genome-mysql.cse.ucsc.edu, db=rheMac8)
Could you please guide me the path of known_gene.txt dump ? Just like it is mentioned for hg19: ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.txt.gz
Also could you please guide me path for related chromosome fasta files of macaca mulata (rheMac8 Assembly) .
We really appreciate your help in the resolution.
Regards,
Himanshu