Data format error: expecting at least 3 fields in BED file

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Oct 13, 2025, 6:10:12 PM (2 days ago) Oct 13

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liftOver doesn't recognize .bed PLINK file. What shall I do?

MacBookPro:data garyzhubc$ ./liftOver VASST.bed hg18ToHg19.over.chain.gz VASST_liftover.bed VASST_liftover_unmapped.bed

Reading liftover chains

Mapping coordinates

Data format error: expecting at least 3 fields in BED file (VASST.bed)

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