Question regarding availability of phastcon text files for 470 way alignment

[Fibi-Smetana, Silvia]

Dear UCSC genome browser team,

I want to first thank you very much for your work! Most of my PhD is built up on your alignments, thank you!

I would have a question. We found that the human 470 way alignments are available but the phastcons elements are not yet available, like in the link below for the 100way alignment.

https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/phastConsElements100way.txt.gz

Do you already have them, is it planned to release them soon?

Thank you very much in advance!

Kind regards,

Silvia Fibi-Smetana

[Gerardo Perez]

Hello, Silvia.

Thank you for your interest in the Genome Browser and for your question about the availability of the phastcon text files for the 470-way alignment.

We do have the hg38 phastConsElements470way file as a bigBed file and it can be found in the hg38 phastCons470way directory on the downloads server: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phastCons470way/

Here is the direct link for the “hg38.phastConsElements470way.bb” file:
https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phastCons470way/hg38.phastConsElements470way.bb

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute

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