Dog genome browser: Dog10K_Boxer_Tasha

[Smita Awasthi]

Hello,

Could you make new genome browser available for dog; Dog10K_Boxer_Tasha (new version of canFam3.1). 

Thanks

Smita

[Hiram Clawson]

Good Afternoon Smita:

Take a look at this genome browser:

https://genome.ucsc.edu/h/GCF_000002285.5

Is that sufficient ?

--Hiram

[Hiram Clawson]

That would be about two months before a browser with those tracks could be made.

This assembly hub does have the NCBI RefSeq gene track.
And, all other RefSeq mRNAs are mapped in the 'RefSeq mRNAs' track

We have not loaded the Ensembl genes, but you can find those definitions
at Ensembl FTP:


ftp://ftp.ensembl.org/pub/rapid-release/species/Canis_lupus_familiaris/GCA_000002285.4/geneset/2020_10/

On 5/10/21 2:02 PM, Smita Awasthi wrote:
> Hello,

> Thanks for uploading Dog10K_Boxer_Tasha genome browser on UCSC. Though I don’t see mRNA, spilled ESTs dog ESTs or other mRNAs under gene and gene prediction and Ensembl. I mean I don’t see much annotation for this assembly. How much time will it take to get all annotations data for this genome assembly. I am asking because I have to plan the analysis of my data accordingly.
> Thanks
>
> Regards
> Smita

[Smita Awasthi]

Hello,
Thanks for uploading Dog10K_Boxer_Tasha genome browser on UCSC. Though I don’t see mRNA, spilled ESTs dog ESTs or other mRNAs under gene and gene prediction and Ensembl. I mean I don’t see much annotation for this assembly. How much time will it take to get all annotations data for this genome assembly. I am asking because I have to plan the analysis of my data accordingly.
Thanks

Regards
Smita

> On May 5, 2021, at 3:27 PM, Hiram Clawson <hi...@soe.ucsc.edu> wrote:
>