Request for chain file : tomato ITAG2.4 to tomato ITAG4.0
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Chloé Ladreyt
Jul 28, 2026, 10:30:31 AM (yesterday) Jul 28
to gen...@soe.ucsc.edu
Dear UCSC Genome Browser team,
I am trying to lift coordinates from tomato (ITAG2.4) to tomato
(ITAG4.0) using liftover, but I cannot find the chain file.
Could you please provide a download link for this chain file or let me
know where I can obtain it ?
Thanks you very much for your help,
Best reagards,
--
Chloé Ladreyt,
PhD student, U. Bordeaux, ED SVS (ED154)
Equipe Métabolisme, UMR1332 BFP Biologie du Fruit et Pathologie
Centre de Recherche INRAE - Bordeaux - Nouvelle Aquitaine
I am trying to lift coordinates from tomato (ITAG2.4) to tomato
(ITAG4.0) using liftover, but I cannot find the chain file.
Could you please provide a download link for this chain file or let me
know where I can obtain it ?
Thanks you very much for your help,
Best reagards,
--
Chloé Ladreyt,
PhD student, U. Bordeaux, ED SVS (ED154)
Equipe Métabolisme, UMR1332 BFP Biologie du Fruit et Pathologie
Centre de Recherche INRAE - Bordeaux - Nouvelle Aquitaine
Hiram Clawson
Jul 28, 2026, 11:30:29 AM (yesterday) Jul 28
to Chloé Ladreyt, gen...@soe.ucsc.edu
Good Morning Chloé:
Can you help identify these assembly versions. I do not see these
identifier strings in any of the meta data for NCBI assemblies.
There are 57 assemblies of "Solanum lycopersicum":
https://genome.ucsc.edu/assemblySearch.html?q=%2BSolanum%20%2Blycopersicum;browser=mayExist
Perhaps you can identify the assemblies from that search result.
--Hiram
Can you help identify these assembly versions. I do not see these
identifier strings in any of the meta data for NCBI assemblies.
There are 57 assemblies of "Solanum lycopersicum":
https://genome.ucsc.edu/assemblySearch.html?q=%2BSolanum%20%2Blycopersicum;browser=mayExist
Perhaps you can identify the assemblies from that search result.
--Hiram
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