bigWigAverageOverBed accounts for strand information or not?
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hulong
Jul 21, 2013, 9:42:59 AM7/21/13
to gen...@soe.ucsc.edu
Dear All,
I'm Hu Long, a PhD student of Tsinghua University, China.
I have a question: Does the bigWigAverageOverBed consider the strand information? Like in Bedtools, IntersectBed can add "-s or -S" parameter to specific the strand, can bigWigAverageOverBed do the seem thing?
Thanks a lot! Looking forward of your reply!
Best
Hu Long.
I'm Hu Long, a PhD student of Tsinghua University, China.
I have a question: Does the bigWigAverageOverBed consider the strand information? Like in Bedtools, IntersectBed can add "-s or -S" parameter to specific the strand, can bigWigAverageOverBed do the seem thing?
Thanks a lot! Looking forward of your reply!
Best
Hu Long.
Steve Heitner
Jul 23, 2013, 6:24:25 PM7/23/13
to hulong, gen...@soe.ucsc.edu
Hello, Hu.
The bigWigAverageOverBed utility does not have a strand-specific parameter.
Wiggle values are not strand-specific and only contain one value per base.
Please contact us again at gen...@soe.ucsc.edu if you have any further
questions.
---
Steve Heitner
UCSC Genome Bioinformatics Group
--
The bigWigAverageOverBed utility does not have a strand-specific parameter.
Wiggle values are not strand-specific and only contain one value per base.
Please contact us again at gen...@soe.ucsc.edu if you have any further
questions.
---
Steve Heitner
UCSC Genome Bioinformatics Group
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