How to download all the CpG islands data of hg38 or hg19 in ucsc?

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Winjor Chen

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Feb 13, 2017, 11:27:38 AM2/13/17

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Hi:

How can i download all the CpG islands data of hg38 or hg19 in ucsc? Are there have a CpG island database?

thx

Luvina Guruvadoo

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Feb 13, 2017, 5:40:37 PM2/13/17

to Winjor Chen, gen...@soe.ucsc.edu

Hello,

Thank you for your question. You can find all the annotated data for human (hg38 or hg19), including CpG Island data from our downloads server here. Click on "Annotation database" for your human assembly of interest, then scroll down to find the cpgIsland* files available. You may also be interested in accessing the data directly from our public MySQL server. Please see this FAQ for more information.

If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Regards,

Luvina

Luvina Guruvadoo
UCSC Genome Browser
http://genome.ucsc.edu

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