A error in Saccharomyces cerevisiae upstream1000.fa
zhao...@mail.ustc.edu.cn
I find a error in Saccharomyces cerevisiae genome data. The file is https://hgdownload.gi.ucsc.edu/goldenPath/sacCer3/bigZips/upstream1000.fa.gz. The refseq mrna names ,like NM_001303607 etc. ,are not Saccharomyces cerevisiae. Please correct it.
Jairo Navarro Gonzalez
Hello,
Thank you for using the UCSC Genome Browser and sending your inquiry.
You are correct that these RefSeq mRNA IDs do not belong to the sacCer3 genome assembly. These files were part of the GenBank pipeline, which we no longer support or maintain. This specific ID, NM_001303607, belongs to the "Other RefSeq" track, which is also no longer supported.
https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=sacCer3&c=chrIV&g=xenoRefGene
To prevent confusion in the future, we have removed these files from the download server.
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
All messages sent to that address are archived on a publicly accessible Google Groups forum.
If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Jairo Navarro
UCSC Genome Browser
I find a error in Saccharomyces cerevisiae genome data. The file is https://hgdownload.gi.ucsc.edu/goldenPath/sacCer3/bigZips/upstream1000.fa.gz. The refseq mrna names ,like NM_001303607 etc. ,are not Saccharomyces cerevisiae. Please correct it.
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