dm6 genome coordinates to musDom2 genome

[Jillian Ness]

Hello,

is it possible to get the chain file or get advice on how to liftover my dm6 bed file to the musDom2 genome?

I already used multiz alignment but am looking for an orthogonal way to grab orthologous sequences as well using liftover.

Best,

Jillian 

[Gerardo Perez]

Hello, Jillian.

Thank you for your interest in the Genome Browser.

We have made the requested liftOver chain files available on our download server:

dm6 -> musDom2: https://hgdownload.soe.ucsc.edu/goldenPath/dm6/liftOver/dm6ToMusDom2.over.chain.gz
musDom2 -> dm6: https://hgdownload.soe.ucsc.edu/goldenPath/musDom2/liftOver/musDom2ToDm6.over.chain.gz

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute

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