INC1877237 Resolved --> Filtering .bed Track file
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May 12, 2026, 10:30:27 PM (7 days ago) May 12
to matte...@unibe.ch, joga...@ucsc.edu, gen...@soe.ucsc.edu, wei...@ucsc.edu
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05-12-2026 07:00 PM PDT - Angela Rossi-Steele Comments
Closing old tickets to prepare for new version of ITS Ticketing system.
03-13-2024 11:37 AM PDT - Guest Comments
reply from: matte...@unibe.ch
Dear all,
I would like to manage/understand how to go to our gene loci of interest and filter the field Name of item.
Using this chromHMM track (https://genome.ucsc.edu/cgi-bin/hgTables?db=mm10&hgta_group=regulation&hgta_track=encode3RenChromHmm&hgta_table=encode3RenChromHmmHeartE11&hgta_doSchema=describe+table+schema)
I could select the loci and create a track activating the Name of item filtering option, this to further visualize only 2 items in the track - such as :
* State 6 - Bright Yellow - Enhancer, Strong TSS-proximal (En-Sp)
* State 7 - Light Yellow - Enhancer, Weak (En-W)
Kind regards,
Zoia Matteo
Matteo Zoia, Ph.D. Student
Gene Regulation & Cardiac Development
Osterwalder Lab
Department for BioMedical Research (DBMR)
University of Bern
Murtenstrasse 28, 369
CH - 3008 Bern
SWITZERLAND
Dear all,
I would like to manage/understand how to go to our gene loci of interest and filter the field Name of item.
Using this chromHMM track (https://genome.ucsc.edu/cgi-bin/hgTables?db=mm10&hgta_group=regulation&hgta_track=encode3RenChromHmm&hgta_table=encode3RenChromHmmHeartE11&hgta_doSchema=describe+table+schema)
I could select the loci and create a track activating the Name of item filtering option, this to further visualize only 2 items in the track - such as :
* State 6 - Bright Yellow - Enhancer, Strong TSS-proximal (En-Sp)
* State 7 - Light Yellow - Enhancer, Weak (En-W)
Kind regards,
Zoia Matteo
Matteo Zoia, Ph.D. Student
Gene Regulation & Cardiac Development
Osterwalder Lab
Department for BioMedical Research (DBMR)
University of Bern
Murtenstrasse 28, 369
CH - 3008 Bern
SWITZERLAND
03-13-2024 10:24 AM PDT - Tristan Carkeet Comments
Hi Matteo, we need a little more clarity to see if we can help you with this.
Are you referencing the UCSC Genome Browser in your research/manuscript?
If not, can you be more specific on the exact resource you are trying to use or reference?
Are you referencing the UCSC Genome Browser in your research/manuscript?
If not, can you be more specific on the exact resource you are trying to use or reference?
Information you provided
Requested For: matte...@unibe.ch
Filtering .bed Track file
User Name:Matteo Zoia
Email: matte...@unibe.ch
Phone Number: 0041794421765
Description : I don't manage to filter multiple names at the same time in the the 4th column of a .bed Track. Is it possible?
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Tech view: INC1877237
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