[Genome] want to compare human chromosomes 18 and 16

[Zafar Nawaz]

Hi,

I want to compare 18p and 16q for any homology between them their
sequence or segmental duplications or repeats etc. Please guide me.

Thanks

zafar

[Kayla Smith]

Dear Zafar,

Your question is answered using our table browser.

Region 18p = chr18:1-16100000
Region 16q = chr16:38200001-88827254

1. Begin by clicking on "Tables" on the blue bar at the top of the page.
2. Choose your clade/genome/assembly
3. Select group: "Variation and Repeats", track: "Segmental dups", table:
"genomeSuperDups".
4. For region, select the radio button "position" and set that equal to
"18p11.1;18p11.32" or it's equivalent "chr18:1-16100000"
5. click on filter
6. edit the filter so that "otherChrom" "does match" "chr16"
7. edit the filter so that "otherStart" "is <=88827254" (which
corresponds to 16q11.1)
8. edit the filter so that "otherEnd" "is >=38200001" (which corresponds
to 16q24.3)
9. click on submit
10. click on get output


Additionally if you are interested there is also a track you can turn on
in the human browser called "self chain" and enter the region you're
interested in. This will be noisier for you, as it will contain
information for chromosomes you're not interested in and also many smaller
alignments than those in the segmental duplications track.

Kayla

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