question and help

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Song, Chunhua

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Jul 8, 2021, 2:14:18 PMJul 8
to gen...@soe.ucsc.edu
Dear there,

I had Bed file for the CUT&TAG peak calling dataset. I want to upload it onto the UCSC genome browser to check the peaks. Do you have the guide for how to upload it to your browser using my computer.

Thank you very much for your help!

I would look forward to hearing from you ASAP!

Best Regards,

Chunhua Song

Gerardo Perez

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Jul 9, 2021, 3:30:39 PMJul 9
to Song, Chunhua, gen...@soe.ucsc.edu

Hello, Chunhua Song.

Thank you for your interest in the Genome Browser and for your question about uploading your BED dataset.

One option would be to create a custom annotation track. More information on creating custom annotation tracks, including sharing these tracks with others, can be found on the following help page: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks. Custom tracks are recommended if you wish to share only a few datasets.

If you have very large sets of data, then you may be interested in creating a Track Hub. You can read more about Track Hubs here: http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html.

If you would like to submit your track hub to be included as a public hub (http://genome.ucsc.edu/cgi-bin/hgHubConnect), here are some additional standard guidelines: http://genomewiki.ucsc.edu/index.php/Public_Hub_Guidelines

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute


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