IGV 2.11.7 and HG19 bug

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Bakkebø Odd-Erik

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Feb 3, 2026, 6:30:23 AM (9 days ago) Feb 3
to gen...@soe.ucsc.edu, Johansen Hugo
Hi,

IGV automatically loads in HG19 when started and on my PC I get this error message every time now: 

Error loading https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/ncbiRefSeq.txt.gz: java.net.SocketException: Connection reset

We are wondering if there could be an issue with the file on your end, as we are not able to download it through browser or anything. 


Med vennlig helsing

Odd-Erik Bakkebø

Universitetssykehuset Nord-Norge HF

Molekylærbiolog

Klinisk Patologi – Spesialanalyser

Tlf: +47 90551431 / 916 50903

Molekylærpatologisk laboratorium

Med pasienten, for pasienten.

 

 

Matthew Speir

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Feb 4, 2026, 7:15:42 PM (7 days ago) Feb 4
to Bakkebø Odd-Erik, gen...@soe.ucsc.edu, Johansen Hugo
Hello, Odd-Erik

Thank you for reporting this issue.

This sounds like a problem with your network since you can't download the file through your web browser either. Can you access that file from your home network, outside the university? I'm able to access that file from my home network with no issues.

If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

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Matthew Speir

UCSC Genome Browser, User Support


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Bakkebø Odd-Erik

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Feb 5, 2026, 3:00:25 AM (7 days ago) Feb 5
to Matthew Speir, gen...@soe.ucsc.edu, Johansen Hugo
Hi Matthew,

Thank you for the quick and easy answer. Our IT-dept have now started going through the networking.

Med vennlig helsing

Odd-Erik Bakkebø

Universitetssykehuset Nord-Norge HF

Molekylærbiolog

Klinisk Patologi – Spesialanalyser

Tlf: +47 90551431 / 916 50903

Molekylærpatologisk laboratorium

Med pasienten, for pasienten.

 

 


Fra: Matthew Speir <msp...@ucsc.edu>
Sendt: torsdag 5. februar 2026 01:15
Til: Bakkebø Odd-Erik <Odd-Erik...@unn.no>
Kopi: gen...@soe.ucsc.edu <gen...@soe.ucsc.edu>; Johansen Hugo <Hugo.J...@hnikt.no>
Emne: Re: [genome] IGV 2.11.7 and HG19 bug
 
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