GBIB virtual box on MacBook Pro

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Andrew Feinberg

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Jun 27, 2022, 12:16:20 PM6/27/22
to gen...@soe.ucsc.edu
Can someone please advise on how to install a virtual box on a computer with an M1 chip? The link provided on the Gbib website flips an error that there is hardware incompatibility in that it needs an AMD chip.
Thanks.

Brian Lee

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Jun 27, 2022, 1:25:08 PM6/27/22
to Andrew Feinberg, gen...@soe.ucsc.edu

Dear Andrew,

Thank you for using the UCSC Genome Browser and your question about the GBiB on the new M1 chip MacBook machines.

We have also noted that Virtualbox doesn't support ARM virtualization. At this time it is unclear if the free VirtualBox VM environment will ever be updated to run on Apple Silicon.

Thank you again for your inquiry and for using the UCSC Genome Browser. If you have any further public questions, please send new questions to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly accessible forum to help others find answers to similar questions. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu, which is a private internal list to our support team.

All the best,


On Mon, Jun 27, 2022 at 9:16 AM Andrew Feinberg <andrew....@weizmann.ac.il> wrote:
Can someone please advise on how to install a virtual box on a computer with an M1 chip? The link provided on the Gbib website flips an error that there is hardware incompatibility in that it needs an AMD chip.
Thanks.

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Andrew Feinberg

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Jun 27, 2022, 4:33:16 PM6/27/22
to Brian Lee, gen...@soe.ucsc.edu
Brian is there a paid alternative?

Sent from my iPhone

On Jun 27, 2022, at 1:25 PM, Brian Lee <bria...@soe.ucsc.edu> wrote:



Brian Lee

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Jun 27, 2022, 5:23:13 PM6/27/22
to Andrew Feinberg, gen...@soe.ucsc.edu

Hi Andrew,

We do not know of a paid alternative. One thought we've had is to try Docker. In theory, there should be a way to run GBiC on docker, an engineer shares. GBiC isn't a virtualbox image, but instead runs all the installation steps and is free for non-commercial use just like GBiB: https://genome.ucsc.edu/goldenpath/help/gbic.html

We are not 100% sure, but in principle, Docker's ubuntu should automatically start to pull ARM binaries for Apache, etc. to install a UCSC Genome Browser mirror. Here is a link to more information: https://genome.ucsc.edu/goldenpath/help/mirror.html#docker-installation-instructions

If it does work for your on your M1 laptop, can you please let us know and we can update some of our internal documentation.

All the best,

Hiram Clawson

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Nov 14, 2022, 8:50:49 PM11/14/22
to Andrew Feinberg, gen...@soe.ucsc.edu
Good Afternoon Andrew:

We are trying out the Mac OSX arm64 (M1) machine binaries:

http://hgdownload.soe.ucsc.edu/admin/exe/macOSX.arm64/README.txt

See if those binaries will function on your newer Mac machine.

--Hiram

On 6/27/22 1:25 PM, Andrew Feinberg wrote:
> Brian is there a paid alternative?
>
> Sent from my iPhone
>
> On Jun 27, 2022, at 1:25 PM, Brian Lee <bria...@soe.ucsc.edu> wrote:
>
> 
>
> Dear Andrew,
>
> Thank you for using the UCSC Genome Browser and your question about the GBiB on the new M1 chip MacBook machines.
>
> We have also noted that Virtualbox doesn't support ARM virtualization. At this time it is unclear if the free VirtualBox VM environment will ever be updated to run on Apple Silicon.
>
> Thank you again for your inquiry and for using the UCSC Genome Browser. If you have any further public questions, please send new questions to gen...@soe.ucsc.edu<mailto:gen...@soe.ucsc.edu>. All messages sent to that address are archived on a publicly accessible forum to help others find answers to similar questions. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu<mailto:genom...@soe.ucsc.edu>, which is a private internal list to our support team.
>
> All the best,
>
> On Mon, Jun 27, 2022 at 9:16 AM Andrew Feinberg <andrew....@weizmann.ac.il<mailto:andrew....@weizmann.ac.il>> wrote:
> Can someone please advise on how to install a virtual box on a computer with an M1 chip? The link provided on the Gbib website flips an error that there is hardware incompatibility in that it needs an AMD chip.
> Thanks.
>
> --
>
> ---
> You received this message because you are subscribed to the Google Groups "UCSC Genome Browser Public Support" group.
> To unsubscribe from this group and stop receiving emails from it, send an email to genome+un...@soe.ucsc.edu<mailto:genome%2Bunsu...@soe.ucsc.edu>.

Galt Barber

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Nov 15, 2022, 3:44:45 AM11/15/22
to Hiram Clawson, Andrew Feinberg, gen...@soe.ucsc.edu
Virtual Box now supports M1 and M2.


Look for “Developer preview for macOS / Arm64 (M1/M2) hosts”.

-Galt

Ar Luan 14 Samh 2022 ag 17:50, scríobh Hiram Clawson <hi...@soe.ucsc.edu>:
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