USCS LiftOver Queries

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周亚琦

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Sep 12, 2025, 1:11:10 PM (4 days ago) Sep 12
to gen...@soe.ucsc.edu

Dear UCSC Genome Browser Team,

I hope this email finds you well. Thank you very much for your team’s invaluable support of scientific research.

I am currently working on a project that requires the conversion of genomic coordinates. However, I was unable to locate the relevant chain file for this conversion on the UCSC Genome Browser.

Specifically, I found that the following chain files have not yet been created:

human  (GRCh38/hg38) to blue whale (GCF_009873245.2)

Would it be possible for your team to provide the chain file ?

Thank you for your help. I look forward to hearing from you.

 
Best regards,  
yaqi zhou

Luis Nassar

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Sep 15, 2025, 6:53:44 PM (7 hours ago) Sep 15
to 周亚琦, gen...@soe.ucsc.edu
Hello, Yaqi.

The requested liftOver file can now be found on our download server: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/liftOver/hg38ToGCF_009873245.2.over.chain.gz

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Lou Nassar
UCSC Genomics Institute
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