Small request for Hg38 to Hg18 lift over chain files

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Glodeanu, Adrian

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Aug 26, 2024, 6:48:32 PM8/26/24
to gen...@soe.ucsc.edu
To whom it may conncern,

Sorry for bothering, my name is Adrian Glodeanu, I am a student of LMU
Munich and trough this email I wanted to make a small request if
possible.

I am trying to run liftover for some genomic data that has used an older
human genome build (hg18) to hg38.

The thing is for my analysis I require both the chain files , Hg38 to
Hg18 (not available on goldenpath/hg38/liftOver/) and Hg 18 to Hg38
(available on goldenPath/hg18/liftOver/).

I saw on the description of the liftOver website that if a chain file is
not availabe, I could contact the email address for support, thus I was
wondering if you still had the liftOver chain files for Hg38 to Hg18

Sorry again for my request, and many thanks for reading my email.

Best regards,
Adrian Glodeanu

Jairo Navarro Gonzalez

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Aug 30, 2024, 10:09:53 PM8/30/24
to Glodeanu, Adrian, gen...@soe.ucsc.edu

Hello,

Thank you for using the UCSC Genome Browser and sending your inquiry.

I apologize for the delay in my response. You can find the liftOver file at the following location:

https://hgdownload.soe.ucsc.edu/goldenPath/hg18/liftOver/hg18ToHg38.over.chain.gz

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
All messages sent to that address are archived on a publicly accessible Google Groups forum.
If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Jairo Navarro
UCSC Genome Browser


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