Question about Repeatmasker in Pan

[juan.a....@upc.edu]

Dear colleagues:
I am working on your Pantro4 release. In the explanation of the
tables it is stated that you use the Repbase Update from GIRI in
order to search for repeats. However GIRI has no specific file
for Chimp repeats. I wonder what file you use. The Chimp has
some repats not found in the GIRI human/primate files, for example
ALRY-MAJOR_PT. I wonder how I could find the complete list of the
repeats you use in Repeatmasker for the Chimp.
Thank you very much for your help

Juan

Dr.Juan A. Subirana, Emeritus Professor, UPC TEL: 34-932093065
e-mail: Juan.A....@upc.edu
Research Programme on Biomedical Informatics (GRIB)
Hospital del Mar Research Inst.(IMIM), Universitat Pompeu Fabra (UPF)
http://evolutionarygenomics.imim.es
Barcelona, Spain

[Hiram Clawson]

Good Afternoon Juan:

The panTro4 sequence was masked with the GIRI file: RepeatMaskerLib.embl
with a version indication:
RELEASE 20110920;

Please note the included listing below with over 1,300 repeats
that would be recognized in panTro4 with the version of this file.
Obtained from the file with the RepeatMasker command:

RepeatMasker/util/queryRepeatDatabase.pl -species "Pan troglodytes" | grep ">"

--Hiram

===================
RepeatMasker Database: RepeatMaskerLib.embl
Version: 20110920
===================

>IS1#ARTEFACT
>IS2#ARTEFACT
>IS3#ARTEFACT
>IS5#ARTEFACT
>IS10#ARTEFACT
>IS30#ARTEFACT
>IS150#ARTEFACT
>IS186#ARTEFACT
>Tn1000#ARTEFACT
>MER53#DNA/hAT RepbaseID: MER53
>MER99#DNA/hAT? RepbaseID: MER99
>MER105#DNA RepbaseID: MER105
>BLACKJACK#DNA/hAT-Blackjack RepbaseID: BLACKJACK
>MER63A#DNA/hAT-Blackjack RepbaseID: MER63A
>MER63B#DNA/hAT-Blackjack RepbaseID: MER63B
>MER63C#DNA/hAT-Blackjack RepbaseID: MER63C
>MER63D#DNA/hAT-Blackjack RepbaseID: MER63D
>MER81#DNA/hAT-Blackjack RepbaseID: MER81
>MER94#DNA/hAT-Blackjack RepbaseID: MER94
>Charlie1a#DNA/hAT-Charlie RepbaseID: CHARLIE1A
>Charlie1b#DNA/hAT-Charlie RepbaseID: CHARLIE1B
>Charlie2a#DNA/hAT-Charlie RepbaseID: CHARLIE2A
>Charlie2b#DNA/hAT-Charlie RepbaseID: CHARLIE2B
>Charlie3#DNA/hAT-Charlie RepbaseID: CHARLIE3
>Charlie4a#DNA/hAT-Charlie RepbaseID: MER80
>Charlie5#DNA/hAT-Charlie RepbaseID: CHARLIE5
>Charlie6#DNA/hAT-Charlie RepbaseID: CHARLIE6
>Charlie7#DNA/hAT-Charlie RepbaseID: CHARLIE7
>Charlie8#DNA/hAT-Charlie RepbaseID: CHARLIE8
>Charlie9#DNA/hAT-Charlie RepbaseID: CHARLIE9
>Charlie10#DNA/hAT-Charlie RepbaseID: CHARLIE10
>Charlie11#DNA/hAT-Charlie RepbaseID: Charlie11
>Charlie12#DNA/hAT-Charlie RepbaseID: Charlie12
>Cheshire#DNA/hAT-Charlie RepbaseID: CHESHIRE
>MER1A#DNA/hAT-Charlie RepbaseID: MER1A
>MER1B#DNA/hAT-Charlie RepbaseID: MER1B
>MER3#DNA/hAT-Charlie RepbaseID: MER3
>MER5A#DNA/hAT-Charlie RepbaseID: MER5A
>MER5A1#DNA/hAT-Charlie
>MER5B#DNA/hAT-Charlie RepbaseID: MER5B
>MER5C#DNA/hAT-Charlie RepbaseID: MER5C
>MER20#DNA/hAT-Charlie RepbaseID: MER20
>MER20B#DNA/hAT-Charlie RepbaseID: MER20B
>MER30#DNA/hAT-Charlie RepbaseID: MER30
>MER30B#DNA/hAT-Charlie RepbaseID: MER30B
>MER33#DNA/hAT-Charlie RepbaseID: MER33
>MER58A#DNA/hAT-Charlie RepbaseID: CHESHIRE_A
>MER58B#DNA/hAT-Charlie RepbaseID: CHESHIRE_B
>MER58C#DNA/hAT-Charlie RepbaseID: MER58C
>MER58D#DNA/hAT-Charlie RepbaseID: MER58D
>MER96#DNA/hAT-Tip100 RepbaseID: MER96
>MER96B#DNA/hAT-Tip100 RepbaseID: MER96B
>MER97a#DNA/hAT-Tip100 RepbaseID: MER97A
>MER97b#DNA/hAT-Tip100 RepbaseID: MER97B
>MER97c#DNA/hAT-Tip100 RepbaseID: MER97C
>MER102a#DNA/hAT-Charlie
>MER102b#DNA/hAT-Charlie RepbaseID: CHARLIE8A
>MER106A#DNA/hAT-Charlie RepbaseID: MER106
>MER106B#DNA/hAT-Charlie RepbaseID: MER106B
>MER107#DNA/hAT-Charlie RepbaseID: MER107
>MER112#DNA/hAT-Charlie RepbaseID: MER112
>MER113#DNA/hAT-Charlie RepbaseID: MER113
>MER117#DNA/hAT-Charlie RepbaseID: MER117
>MER119#DNA/hAT-Charlie RepbaseID: MER119
>MER2#DNA/TcMar-Tigger RepbaseID: MER2
>MER2B#DNA/TcMar-Tigger RepbaseID: MER2B
>MER6#DNA/TcMar-Tigger RepbaseID: MER6
>MER6A#DNA/TcMar-Tigger RepbaseID: MER6A
>MER6B#DNA/TcMar-Tigger RepbaseID: MER6B
>MER6C#DNA/TcMar-Tigger RepbaseID: MER6C
>MER8#DNA/TcMar-Tigger RepbaseID: MER8
>MER44A#DNA/TcMar-Tigger RepbaseID: MER44A
>MER44B#DNA/TcMar-Tigger RepbaseID: MER44B
>MER44C#DNA/TcMar-Tigger RepbaseID: MER44C
>MER44D#DNA/TcMar-Tigger RepbaseID: MER44D
>MER46C#DNA/TcMar-Tigger RepbaseID: MER46C
>MER47A#DNA/TcMar-Tigger RepbaseID: TIGGER5A
>MER47B#DNA/TcMar-Tigger RepbaseID: MER47B
>MER47C#DNA/TcMar-Tigger RepbaseID: MER47C
>Tigger2#DNA/TcMar-Tigger RepbaseID: TIGGER2
>Tigger2a#DNA/TcMar-Tigger RepbaseID: MER28
>Tigger2b_Pri#DNA/TcMar-Tigger RepbaseID: Tigger2b_Pri
>Tigger3#DNA/TcMar-Tigger RepbaseID: GOLEM
>Tigger3a#DNA/TcMar-Tigger RepbaseID: GOLEM_A
>Tigger3b#DNA/TcMar-Tigger RepbaseID: Tigger3b
>Tigger3c#DNA/TcMar-Tigger RepbaseID: Tigger3c
>Tigger3d#DNA/TcMar-Tigger RepbaseID: Tigger3d
>Tigger4#DNA/TcMar-Tigger RepbaseID: ZOMBI
>Tigger4a#DNA/TcMar-Tigger RepbaseID: Tigger4a
>Tigger4b#DNA/TcMar-Tigger RepbaseID: ZOMBI_B
>Tigger5#DNA/TcMar-Tigger RepbaseID: TIGGER5
>Tigger6a#DNA/TcMar-Tigger
>Tigger6b#DNA/TcMar-Tigger RepbaseID: TIGGER6B
>Tigger7#DNA/TcMar-Tigger RepbaseID: TIGGER7
>Tigger8#DNA/TcMar-Tigger RepbaseID: TIGGER8
>HSMAR1#DNA/TcMar-Mariner RepbaseID: HSMAR1
>HSMAR2#DNA/TcMar-Mariner RepbaseID: HSMAR2
>MADE1#DNA/TcMar-Mariner RepbaseID: MADE1
>MADE2#DNA/TcMar-Mariner RepbaseID: MER116
>MARNA#DNA/TcMar-Mariner RepbaseID: MARNA
>Merlin1_HS#DNA/Merlin RepbaseID: Merlin1_HS
>Ricksha#DNA/MULE-MuDR
>Ricksha_0#DNA/MULE-MuDR RepbaseID: RICKSHA_0
>Ricksha_a#DNA/MULE-MuDR RepbaseID: Ricksha_a
>Ricksha_b#DNA/MULE-MuDR
>Ricksha_c#DNA/MULE-MuDR RepbaseID: RICKSHA
>Looper#DNA/PiggyBac RepbaseID: LOOPER
>MER75#DNA/PiggyBac RepbaseID: MER75
>MER75B#DNA/PiggyBac RepbaseID: MER75B
>MER85#DNA/PiggyBac RepbaseID: MER85
>Kanga1#DNA/TcMar-Tc2 RepbaseID: Kanga1
>Kanga2_a#DNA/TcMar-Tc2 RepbaseID: KANGA2_A
>MER104#DNA/TcMar-Tc2 RepbaseID: MER104
>Kanga1a#DNA/TcMar-Tc2 RepbaseID: MER104A
>Kanga1b#DNA/TcMar-Tc2 RepbaseID: MER104B
>Kanga1c#DNA/TcMar-Tc2 RepbaseID: MER104C
>Arthur1#DNA/hAT-Tip100 RepbaseID: MER69C
>FordPrefect#DNA/hAT-Tip100 RepbaseID: FORDPREFECT
>FordPrefect_a#DNA/hAT-Tip100 RepbaseID: FORDPREFECT_A
>MER45A#DNA/hAT-Tip100 RepbaseID: MER45
>MER45B#DNA/hAT-Tip100 RepbaseID: MER45B
>MER45C#DNA/hAT-Tip100 RepbaseID: MER45C
>MER45R#DNA/hAT-Tip100 RepbaseID: MER45R
>Arthur1A#DNA/hAT-Tip100 RepbaseID: MER69A
>Arthur1B#DNA/hAT-Tip100 RepbaseID: MER69B
>MER91A#DNA/hAT-Tip100 RepbaseID: MER91A
>MER91B#DNA/hAT-Tip100 RepbaseID: MER91B
>MER91C#DNA/hAT-Tip100 RepbaseID: MER91C
>MER115#DNA/hAT-Tip100 RepbaseID: MER115
>ORSL#DNA/hAT-Tip100 RepbaseID: ORSL
>Zaphod#DNA/hAT-Tip100 RepbaseID: ZAPHOD
>Zaphod2#DNA/hAT-Tip100
>L3#LINE/CR1 RepbaseID: L3
>L3b_3end#LINE/CR1 RepbaseID: L3b_3end
>HAL1#LINE/L1 RepbaseID: HAL1
>HAL1b#LINE/L1 RepbaseID: HAL1B
>L1HS_3end#LINE/L1 RepbaseID: L1HS
>L1M1_5end#LINE/L1 RepbaseID: L1M1_5
>L1M1_orf2#LINE/L1
>L1M2_5end#LINE/L1 RepbaseID: L1M2_5
>L1M2_orf2#LINE/L1
>L1M2a1_5end#LINE/L1 RepbaseID: L1M2A1_5
>L1M2a_5end#LINE/L1 RepbaseID: L1M2A_5
>L1M2b_5end#LINE/L1 RepbaseID: L1M2B_5
>L1M2c_5end#LINE/L1 RepbaseID: L1M2C_5
>L1M3_orf2#LINE/L1
>L1M3a_5end#LINE/L1 RepbaseID: L1M3B_5
>L1M3b_5end#LINE/L1
>L1M3c_5end#LINE/L1 RepbaseID: L1M3C_5
>L1M3d_5end#LINE/L1 RepbaseID: L1M3D_5
>L1M3de_5end#LINE/L1 RepbaseID: L1M3DE_5
>L1M3e_5end#LINE/L1 RepbaseID: L1MA9_5
>L1M3f_5end#LINE/L1 RepbaseID: L1M1B_5
>L1M4_5end#LINE/L1 RepbaseID: L1MB6_5
>L1M4_orf2#LINE/L1
>L1M4b_5end#LINE/L1 RepbaseID: L1M4B
>L1M4c_5end#LINE/L1 RepbaseID: L1MB3_5
>L1M5_orf2#LINE/L1
>L1MA10_3end#LINE/L1 RepbaseID: L1MA10
>L1MA1_3end#LINE/L1 RepbaseID: L1MA1
>L1MA2_3end#LINE/L1 RepbaseID: L1MA2
>L1MA3_3end#LINE/L1 RepbaseID: L1MA3
>L1MA4A_3end#LINE/L1 RepbaseID: L1MA4A
>L1MA4_3end#LINE/L1 RepbaseID: L1MA4
>L1MA5A_3end#LINE/L1 RepbaseID: L1MA5A
>L1MA5_3end#LINE/L1 RepbaseID: L1MA5
>L1MA6_3end#LINE/L1 RepbaseID: L1MA6
>L1MA7_3end#LINE/L1 RepbaseID: L1MA7
>L1MA8_3end#LINE/L1 RepbaseID: L1MA8
>L1MA9_3end#LINE/L1 RepbaseID: L1MA9
>L1MB1_3end#LINE/L1 RepbaseID: L1MB1
>L1MB2_3end#LINE/L1 RepbaseID: L1MB2
>L1MB3_3end#LINE/L1 RepbaseID: L1MB3
>L1MB4_3end#LINE/L1 RepbaseID: L1MB4
>L1MB4_5end#LINE/L1 RepbaseID: L1MB4_5
>L1MB5_3end#LINE/L1 RepbaseID: L1MB5
>L1MB7_3end#LINE/L1 RepbaseID: L1MB7
>L1MB8_3end#LINE/L1 RepbaseID: L1MB8
>L1MC1_3end#LINE/L1 RepbaseID: L1MC1
>L1MC2_3end#LINE/L1 RepbaseID: L1MC2
>L1MC3_3end#LINE/L1 RepbaseID: L1MC3
>L1MC4_3end#LINE/L1 RepbaseID: L1MC4
>L1MC4_3endX#LINE/L1
>L1MC4_5end#LINE/L1 RepbaseID: L1MC4_5end
>L1MC4a_3end#LINE/L1
>L1MC5_3end#LINE/L1 RepbaseID: L1MC5
>L1MC_orf2#LINE/L1
>L1MCa_5end#LINE/L1 RepbaseID: L1MCA_5
>L1MCb_5end#LINE/L1 RepbaseID: L1MCB_5
>L1MCc_5end#LINE/L1 RepbaseID: L1MCC_5
>L1MD1_3end#LINE/L1 RepbaseID: L1MD1
>L1MD2_3end#LINE/L1 RepbaseID: L1MD2
>L1MD2_5end#LINE/L1
>L1MD3_3end#LINE/L1 RepbaseID: L1MD3
>L1MD_orf2#LINE/L1
>L1MDa_5end#LINE/L1 RepbaseID: L1MDA_5
>L1MDb_5end#LINE/L1 RepbaseID: L1MDB_5
>L1ME1_3end#LINE/L1 RepbaseID: L1ME1
>L1ME2_3end#LINE/L1 RepbaseID: L1ME2
>L1ME3A_3end#LINE/L1 RepbaseID: L1ME3A
>L1ME3B_3end#LINE/L1
>L1ME3_3end#LINE/L1 RepbaseID: L1ME3
>L1ME4a_3end#LINE/L1 RepbaseID: L1ME4A
>L1MEa_5end#LINE/L1 RepbaseID: L1MEA_5
>L1MEb_5end#LINE/L1 RepbaseID: L1MEB_5
>L1MEc_5end#LINE/L1 RepbaseID: L1MEC_5
>L1MEd_5end#LINE/L1 RepbaseID: L1MED_5
>L1P1_5end#LINE/L1 RepbaseID: L1
>L1P1_orf2#LINE/L1 RepbaseID: L1HS
>L1P2_5end#LINE/L1
>L1P3_5end#LINE/L1 RepbaseID: L1PA7_5
>L1P3_orf2#LINE/L1
>L1P3b_5end#LINE/L1
>L1P4_orf2#LINE/L1
>L1P4a_5end#LINE/L1 RepbaseID: L1P4a_5end
>L1P4b_5end#LINE/L1 RepbaseID: L1P4b_5end
>L1P4c_5end#LINE/L1 RepbaseID: L1P4c_5end
>L1P4d_5end#LINE/L1 RepbaseID: L1P4d_5end
>L1P4e_5end#LINE/L1 RepbaseID: L1P4e_5end
>L1PA10_3end#LINE/L1 RepbaseID: L1PA10
>L1PA10_5end#LINE/L1
>L1PA11_3end#LINE/L1 RepbaseID: L1PA11
>L1PA12_3end#LINE/L1 RepbaseID: L1PA12
>L1PA12_5end#LINE/L1 RepbaseID: L1PA12_5
>L1PA13_3end#LINE/L1 RepbaseID: L1PA13
>L1PA13_5end#LINE/L1 RepbaseID: L1PA13_5
>L1PA14_3end#LINE/L1 RepbaseID: L1PA14
>L1PA14_5end#LINE/L1 RepbaseID: L1PA14_5
>L1PA15-16_5end#LINE/L1 RepbaseID: L1PA16_5
>L1PA15_3end#LINE/L1 RepbaseID: L1PA15
>L1PA16_3end#LINE/L1 RepbaseID: L1PA16
>L1PA17_3end#LINE/L1
>L1PA17_5end#LINE/L1 RepbaseID: L1PA17_5
>L1PA2_3end#LINE/L1 RepbaseID: L1PA2
>L1PA3_3end#LINE/L1 RepbaseID: L1PA3
>L1PA4_3end#LINE/L1 RepbaseID: L1PA4
>L1PA5_3end#LINE/L1 RepbaseID: L1PA5
>L1PA6_3end#LINE/L1 RepbaseID: L1PA6
>L1PA7_3end#LINE/L1 RepbaseID: L1PA7
>L1PA8A_3end#LINE/L1
>L1PA8_3end#LINE/L1 RepbaseID: L1PA8
>L1PB1_3end#LINE/L1 RepbaseID: L1PB1
>L1PB2_3end#LINE/L1 RepbaseID: L1PB2
>L1PB3_3end#LINE/L1 RepbaseID: L1PB3
>L1PB4_3end#LINE/L1 RepbaseID: L1PB4
>L1PB_orf2#LINE/L1 RepbaseID: L1PB_orf2
>L1PBa1_5end#LINE/L1 RepbaseID: L1PBA1_5
>L1PBa_5end#LINE/L1 RepbaseID: L1PBA_5
>L1PBb_5end#LINE/L1 RepbaseID: L1PBB_5
>L1Pt_3end#LINE/L1 RepbaseID: L1Pt
>L1Pt_5end#LINE/L1 RepbaseID: L1Pt_5end
>L2#LINE/L2
>L2a_3end#LINE/L2
>L2b_3end#LINE/L2 RepbaseID: L2B
>LTR11#LTR/ERV RepbaseID: LTR11
>LTR55#LTR/ERVL? RepbaseID: LTR55
>MER95#LTR/ERV1 RepbaseID: MER95
>HERV3#LTR/ERV1 RepbaseID: HERV3
>HERV9#LTR/ERV1
>HERV15#LTR/ERV1
>HERV17#LTR/ERV1 RepbaseID: HERV17
>HERV30#LTR/ERV1 RepbaseID: HERV30I
>HERV35I#LTR/ERV1 RepbaseID: HERV35I
>HERVE#LTR/ERV1 RepbaseID: HERVE
>HERVFH19#LTR/ERV1 RepbaseID: HERVFH19I
>HERVFH21#LTR/ERV1 RepbaseID: HERVFH21I
>HERVH#LTR/ERV1 RepbaseID: HERVH
>HERVH48#LTR/ERV1 RepbaseID: HERVH48I
>HERVI#LTR/ERV1 RepbaseID: HERVI
>HERVIP10F#LTR/ERV1 RepbaseID: HERVIP10F
>HERVIP10FH#LTR/ERV1 RepbaseID: HERVIP10FH
>HERVP71A#LTR/ERV1 RepbaseID: HERVP71A_I
>HERVS71#LTR/ERV1 RepbaseID: HERVS71
>HUERS-P1#LTR/ERV1 RepbaseID: HUERS-P1
>HUERS-P2#LTR/ERV1 RepbaseID: HUERS-P2
>HUERS-P3#LTR/ERV1 RepbaseID: HUERS-P3
>HUERS-P3b#LTR/ERV1 RepbaseID: HUERS-P3B
>Harlequin#LTR/ERV1 RepbaseID: HARLEQUIN
>LOR1-int#LTR/ERV1 RepbaseID: LOR1I
>LOR1a#LTR/ERV1 RepbaseID: LOR1a_LTR
>LOR1b#LTR/ERV1 RepbaseID: LOR1b_LTR
>LTR1#LTR/ERV1 RepbaseID: LTR1
>LTR1B#LTR/ERV1 RepbaseID: LTR1B
>LTR1C#LTR/ERV1 RepbaseID: LTR1C
>LTR1D#LTR/ERV1 RepbaseID: LTR1D
>LTR2#LTR/ERV1 RepbaseID: HARLEQUINLTR
>LTR2B#LTR/ERV1 RepbaseID: LTR2B
>LTR2C#LTR/ERV1 RepbaseID: LTR2C
>LTR4#LTR/ERV1 RepbaseID: LTR4
>LTR6A#LTR/ERV1 RepbaseID: LTR6A
>LTR6B#LTR/ERV1 RepbaseID: LTR6B
>LTR7#LTR/ERV1
>LTR7A#LTR/ERV1 RepbaseID: LTR7A
>LTR7B#LTR/ERV1 RepbaseID: LTR7B
>LTR7Y#LTR/ERV1 RepbaseID: LTR7Y
>LTR8#LTR/ERV1 RepbaseID: LTR8
>LTR8A#LTR/ERV1 RepbaseID: LTR8A
>LTR9#LTR/ERV1 RepbaseID: LTR9
>LTR9B#LTR/ERV1 RepbaseID: LTR9B
>LTR10A#LTR/ERV1 RepbaseID: LTR10A
>LTR10B#LTR/ERV1 RepbaseID: LTR10B
>LTR10B1#LTR/ERV1 RepbaseID: LTR10B1
>LTR10C#LTR/ERV1 RepbaseID: LTR10C
>LTR10D#LTR/ERV1 RepbaseID: LTR10D
>LTR10E#LTR/ERV1 RepbaseID: LTR10E
>LTR10F#LTR/ERV1 RepbaseID: LTR10F
>LTR10G#LTR/ERV1 RepbaseID: LTR10G
>LTR12#LTR/ERV1 RepbaseID: LTR12
>LTR12B#LTR/ERV1 RepbaseID: LTR12B
>LTR12C#LTR/ERV1 RepbaseID: LTR12C
>LTR12D#LTR/ERV1 RepbaseID: LTR12D
>LTR12E#LTR/ERV1 RepbaseID: LTR12E
>LTR12_#LTR/ERV1
>LTR15#LTR/ERV1 RepbaseID: LTR15
>LTR17#LTR/ERV1 RepbaseID: LTR17
>LTR19-int#LTR/ERV1
>LTR19A#LTR/ERV1 RepbaseID: LTR19A
>LTR19B#LTR/ERV1 RepbaseID: LTR19B
>LTR19C#LTR/ERV1 RepbaseID: LTR19C
>LTR21A#LTR/ERV1 RepbaseID: LTR21A
>LTR21B#LTR/ERV1 RepbaseID: LTR21B
>LTR23-int#LTR/ERV1
>LTR23#LTR/ERV1 RepbaseID: LTR23
>LTR24#LTR/ERV1 RepbaseID: LTR24
>LTR24B#LTR/ERV1 RepbaseID: LTR24B
>LTR24C#LTR/ERV1 RepbaseID: LTR24C
>LTR25-int#LTR/ERV1 RepbaseID: LTR25-int
>LTR25#LTR/ERV1 RepbaseID: LTR25
>LTR26#LTR/ERV1 RepbaseID: LTR26
>LTR26B#LTR/ERV1 RepbaseID: LTR26B
>LTR26E#LTR/ERV1 RepbaseID: LTR26E
>LTR27#LTR/ERV1 RepbaseID: LTR27
>LTR27B#LTR/ERV1 RepbaseID: LTR27B
>LTR28#LTR/ERV1 RepbaseID: LTR28
>LTR29#LTR/ERV1 RepbaseID: LTR29
>LTR30#LTR/ERV1 RepbaseID: LTR30
>LTR31#LTR/ERV1 RepbaseID: LTR31
>LTR34#LTR/ERV1 RepbaseID: LTR34
>LTR35#LTR/ERV1 RepbaseID: LTR35
>LTR36#LTR/ERV1 RepbaseID: LTR36
>LTR37A#LTR/ERV1 RepbaseID: LTR37A
>LTR37B#LTR/ERV1 RepbaseID: LTR37B
>LTR38-int#LTR/ERV1 RepbaseID: HERV38I
>LTR38#LTR/ERV1 RepbaseID: LTR38
>LTR38B#LTR/ERV1 RepbaseID: LTR38B
>LTR38C#LTR/ERV1 RepbaseID: LTR38C
>LTR39-int#LTR/ERV1
>LTR39#LTR/ERV1 RepbaseID: LTR39
>LTR43-int#LTR/ERV1 RepbaseID: LTR43_I
>LTR43#LTR/ERV1 RepbaseID: LTR43
>LTR43B#LTR/ERV1 RepbaseID: LTR43B
>LTR44#LTR/ERV1 RepbaseID: LTR44
>LTR45#LTR/ERV1 RepbaseID: LTR45
>LTR45B#LTR/ERV1 RepbaseID: LTR45B
>LTR45C#LTR/ERV1 RepbaseID: LTR45C
>LTR46-int#LTR/ERV1 RepbaseID: HERV46I
>LTR46#LTR/ERV1 RepbaseID: LTR46
>LTR48#LTR/ERV1 RepbaseID: LTR48
>LTR48B#LTR/ERV1 RepbaseID: LTR48B
>LTR49-int#LTR/ERV1 RepbaseID: HERV49I
>LTR49#LTR/ERV1 RepbaseID: LTR49
>LTR51#LTR/ERV1 RepbaseID: LTR51
>LTR54#LTR/ERV1 RepbaseID: LTR54
>LTR54B#LTR/ERV1 RepbaseID: LTR54B
>LTR56#LTR/ERV1 RepbaseID: LTR56
>LTR58#LTR/ERV1 RepbaseID: LTR58
>LTR59#LTR/ERV1 RepbaseID: LTR59
>LTR60#LTR/ERV1 RepbaseID: LTR60
>LTR61#LTR/ERV1 RepbaseID: LTR61
>LTR64#LTR/ERV1 RepbaseID: LTR64
>LTR65#LTR/ERV1 RepbaseID: LTR65
>LTR68#LTR/ERV1 RepbaseID: LTR68
>LTR70#LTR/ERV1 RepbaseID: LTR70
>LTR71A#LTR/ERV1 RepbaseID: LTR71A
>LTR71B#LTR/ERV1 RepbaseID: LTR71B
>LTR72#LTR/ERV1 RepbaseID: LTR72
>LTR72B#LTR/ERV1 RepbaseID: LTR72B
>LTR73#LTR/ERV1 RepbaseID: LTR73
>LTR75_1#LTR/ERV1 RepbaseID: LTR75_1
>LTR76#LTR/ERV1 RepbaseID: LTR76
>LTR77#LTR/ERV1 RepbaseID: LTR77
>MER4-int#LTR/ERV1 RepbaseID: MER4I
>MER4A#LTR/ERV1 RepbaseID: MER4A
>MER4A1#LTR/ERV1 RepbaseID: MER4A1
>MER4A1_#LTR/ERV1 RepbaseID: MER4A1_LTR
>MER4B#LTR/ERV1 RepbaseID: MER4B
>MER4B-int#LTR/ERV1 RepbaseID: MER4BI
>MER4C#LTR/ERV1 RepbaseID: MER4C
>MER4D#LTR/ERV1 RepbaseID: MER4D_LTR
>MER4D0#LTR/ERV1 RepbaseID: MER4D
>MER4D1#LTR/ERV1 RepbaseID: MER4D1
>MER4E#LTR/ERV1 RepbaseID: MER4E
>MER4E1#LTR/ERV1 RepbaseID: MER4E1
>MER21-int#LTR/ERVL RepbaseID: MER21I
>MER21A#LTR/ERVL RepbaseID: MER21A
>MER21B#LTR/ERVL RepbaseID: MER21B
>MER21C#LTR/ERVL RepbaseID: MER21C
>MER31-int#LTR/ERV1 RepbaseID: MER31_I
>MER31A#LTR/ERV1 RepbaseID: MER31A
>MER31B#LTR/ERV1 RepbaseID: MER31B
>MER34-int#LTR/ERV1 RepbaseID: MER34-int
>MER34#LTR/ERV1 RepbaseID: MER34
>MER34B#LTR/ERV1 RepbaseID: MER34B
>MER34B-int#LTR/ERV1 RepbaseID: MER34B_I
>MER34C#LTR/ERV1 RepbaseID: MER34C
>MER34C_#LTR/ERV1
>MER34D#LTR/ERV1 RepbaseID: MER34D
>MER39#LTR/ERV1 RepbaseID: MER39
>MER39B#LTR/ERV1 RepbaseID: MER39B
>MER41-int#LTR/ERV1 RepbaseID: MER41I
>MER41A#LTR/ERV1 RepbaseID: MER41A
>MER41B#LTR/ERV1 RepbaseID: MER41B
>MER41C#LTR/ERV1 RepbaseID: MER41C
>MER41D#LTR/ERV1 RepbaseID: MER41D
>MER41E#LTR/ERV1 RepbaseID: MER41E
>MER41G#LTR/ERV1 RepbaseID: MER41G
>MER48#LTR/ERV1 RepbaseID: MER48
>MER49#LTR/ERV1 RepbaseID: MER49
>MER50-int#LTR/ERV1 RepbaseID: MER50I
>MER50#LTR/ERV1 RepbaseID: MER50
>MER50B#LTR/ERV1 RepbaseID: MER50B
>MER51-int#LTR/ERV1 RepbaseID: MER51I
>MER51A#LTR/ERV1 RepbaseID: MER51A
>MER51B#LTR/ERV1 RepbaseID: MER51B
>MER51C#LTR/ERV1 RepbaseID: MER51C
>MER51D#LTR/ERV1 RepbaseID: MER51D
>MER51E#LTR/ERV1 RepbaseID: MER51E
>MER52-int#LTR/ERV1 RepbaseID: MER52AI
>MER52A#LTR/ERV1 RepbaseID: MER52A
>MER52C#LTR/ERV1 RepbaseID: MER52C
>MER52D#LTR/ERV1 RepbaseID: MER52D
>MER57-int#LTR/ERV1 RepbaseID: MER57I
>MER57A1#LTR/ERV1 RepbaseID: MER57A1
>MER57A-int#LTR/ERV1 RepbaseID: MER57A_I
>MER57B2#LTR/ERV1 RepbaseID: MER57B2
>MER61-int#LTR/ERV1 RepbaseID: MER61I
>MER61A#LTR/ERV1 RepbaseID: MER61A
>MER61B#LTR/ERV1 RepbaseID: MER61B
>MER61C#LTR/ERV1 RepbaseID: MER61C
>MER61D#LTR/ERV1 RepbaseID: MER61D
>MER61E#LTR/ERV1 RepbaseID: MER61E
>MER61F#LTR/ERV1 RepbaseID: MER61F
>MER65-int#LTR/ERV1 RepbaseID: MER65I
>MER65A#LTR/ERV1 RepbaseID: MER65A
>MER65B#LTR/ERV1 RepbaseID: MER65B
>MER65C#LTR/ERV1 RepbaseID: MER65C
>MER65D#LTR/ERV1 RepbaseID: MER65D
>MER66-int#LTR/ERV1 RepbaseID: MER66_I
>MER66A#LTR/ERV1 RepbaseID: MER66A
>MER66B#LTR/ERV1 RepbaseID: MER66B
>MER66C#LTR/ERV1 RepbaseID: MER66C
>MER67A#LTR/ERV1 RepbaseID: MER67A
>MER67B#LTR/ERV1 RepbaseID: MER67B
>MER67C#LTR/ERV1 RepbaseID: MER67C
>MER67D#LTR/ERV1 RepbaseID: MER67D
>MER72#LTR/ERV1 RepbaseID: MER72
>MER72B#LTR/ERV1 RepbaseID: MER72B
>MER83#LTR/ERV1 RepbaseID: MER83
>MER83A-int#LTR/ERV1 RepbaseID: MER83AI
>MER83B#LTR/ERV1 RepbaseID: MER83B
>MER83B-int#LTR/ERV1 RepbaseID: MER83BI
>MER83C#LTR/ERV1 RepbaseID: MER83C
>MER84-int#LTR/ERV1 RepbaseID: MER84I
>MER84#LTR/ERV1 RepbaseID: MER84
>MER87#LTR/ERV1 RepbaseID: MER87
>MER89-int#LTR/ERV1 RepbaseID: MER89I
>MER89#LTR/ERV1 RepbaseID: MER89
>MER90#LTR/ERV1 RepbaseID: MER90
>MER90a#LTR/ERV1 RepbaseID: MER90a_LTR
>MER92A#LTR/ERV1 RepbaseID: MER92A
>MER92B#LTR/ERV1 RepbaseID: MER92B
>MER92C#LTR/ERV1 RepbaseID: MER92C
>MER57F#LTR/ERV1 RepbaseID: MER57F
>MER57E2#LTR/ERV1 RepbaseID: MER57E2
>MER101-int#LTR/ERV1 RepbaseID: MER101_I
>MER101#LTR/ERV1 RepbaseID: MER101
>MER101B#LTR/ERV1 RepbaseID: MER101B
>MER110-int#LTR/ERV1 RepbaseID: MER110I
>MER110#LTR/ERV1 RepbaseID: MER110
>MER110A#LTR/ERV1 RepbaseID: MER110A
>PABL_A#LTR/ERV1 RepbaseID: PABL_A
>PABL_A-int#LTR/ERV1 RepbaseID: PABL_AI
>PABL_B#LTR/ERV1 RepbaseID: PABL_B
>PABL_B-int#LTR/ERV1 RepbaseID: PABL_BI
>PRIMA4-int#LTR/ERV1 RepbaseID: PRIMA4_I
>PRIMA4_LTR#LTR/ERV1 RepbaseID: PRIMA4_LTR
>PRIMA41-int#LTR/ERV1 RepbaseID: PRIMA41
>PRIMAX-int#LTR/ERV1 RepbaseID: PRIMAX_I
>PTERV1a#LTR/ERV1 RepbaseID: PTERV1a
>PTERV1a_LTR#LTR/ERV1 RepbaseID: PTERV1a_LTR
>PTERV1b#LTR/ERV1 RepbaseID: PTERV1b
>PTERV1c#LTR/ERV1 RepbaseID: PTERV1c
>PTERV1c_LTR#LTR/ERV1
>PTERV1d#LTR/ERV1
>PTERV2a#LTR/ERV1 RepbaseID: PTERV2a
>PTERV2a_LTR#LTR/ERV1 RepbaseID: PTERV2a_LTR
>PTERV2b#LTR/ERV1 RepbaseID: PTERV2b
>PTERV2b_LTR#LTR/ERV1 RepbaseID: PTERV2b_LTR
>PTERV2c_LTR#LTR/ERV1 RepbaseID: PTERV2c_LTR
>RTVL-Ib-int#LTR/ERV1 RepbaseID: RTVL-Ib_I
>HERVK#LTR/ERVK RepbaseID: HERVK
>HERVK3#LTR/ERVK RepbaseID: HERVK3I
>HERVK9#LTR/ERVK RepbaseID: HERVK9I
>HERVK11#LTR/ERVK RepbaseID: HERVK11I
>HERVK11D#LTR/ERVK RepbaseID: HERVK11DI
>HERVK13#LTR/ERVK RepbaseID: HERVK13I
>HERVK14#LTR/ERVK RepbaseID: HERV-K14I
>HERVK14C#LTR/ERVK RepbaseID: HERV-K14CI
>HERVK22#LTR/ERVK RepbaseID: HERVK22I
>HERVKC4#LTR/ERVK RepbaseID: HERVKC4
>LTR3#LTR/ERVK RepbaseID: LTR3
>LTR3A#LTR/ERVK RepbaseID: LTR3A
>LTR3B#LTR/ERVK RepbaseID: LTR3B
>LTR3B_#LTR/ERVK
>LTR5#LTR/ERVK RepbaseID: LTR5
>LTR5A#LTR/ERVK RepbaseID: LTR5A
>LTR5B#LTR/ERVK RepbaseID: LTR5B
>LTR5_Hs#LTR/ERVK RepbaseID: LTR5_Hs
>LTR13#LTR/ERVK RepbaseID: LTR13
>LTR13A#LTR/ERVK RepbaseID: LTR13A
>LTR13_#LTR/ERVK
>LTR14#LTR/ERVK RepbaseID: LTR14
>LTR14A#LTR/ERVK RepbaseID: LTR14A
>LTR14B#LTR/ERVK RepbaseID: LTR14B
>LTR14C#LTR/ERVK RepbaseID: LTR14C
>LTR22#LTR/ERVK
>LTR22A#LTR/ERVK RepbaseID: LTR22A
>LTR22B#LTR/ERVK RepbaseID: LTR22B
>LTR22C#LTR/ERVK RepbaseID: LTR22C
>MER9B#LTR/ERVK RepbaseID: MER9B
>MER11A#LTR/ERVK RepbaseID: MER11A
>MER11B#LTR/ERVK RepbaseID: MER11B
>MER11C#LTR/ERVK RepbaseID: MER11C
>MER11D#LTR/ERVK RepbaseID: MER11D
>ERVL#LTR/ERVL RepbaseID: ERVL
>ERVL-B4#LTR/ERVL RepbaseID: ERVL-B4
>ERVL-E#LTR/ERVL RepbaseID: ERVL-E
>HERV16#LTR/ERVL RepbaseID: HERV16
>HERVL#LTR/ERVL RepbaseID: HERVL
>HERVL18#LTR/ERVL RepbaseID: HERV18
>HERVL32#LTR/ERVL
>HERVL40#LTR/ERVL RepbaseID: HERVL_40
>HERVL66#LTR/ERVL RepbaseID: HERVL66I
>HERVL74#LTR/ERVL RepbaseID: HERVL74
>LTR16A#LTR/ERVL RepbaseID: LTR16A
>LTR16A1#LTR/ERVL RepbaseID: LTR16A1
>LTR16B#LTR/ERVL RepbaseID: LTR16B
>LTR16C#LTR/ERVL
>LTR16D#LTR/ERVL
>LTR18A#LTR/ERVL RepbaseID: LTR18A
>LTR18B#LTR/ERVL RepbaseID: LTR18B
>LTR32#LTR/ERVL RepbaseID: LTR32
>LTR33#LTR/ERVL RepbaseID: LTR33
>LTR33A#LTR/ERVL RepbaseID: LTR33A
>LTR40a#LTR/ERVL RepbaseID: LTR40A
>LTR40b#LTR/ERVL RepbaseID: LTR40B
>LTR40c#LTR/ERVL RepbaseID: LTR40C
>LTR41#LTR/ERVL RepbaseID: LTR41
>LTR42#LTR/ERVL RepbaseID: LTR42
>LTR47A#LTR/ERVL RepbaseID: LTR47A
>LTR47B#LTR/ERVL RepbaseID: LTR47B
>LTR50#LTR/ERVL RepbaseID: LTR50
>LTR52-int#LTR/ERVL RepbaseID: HERV52I
>LTR52#LTR/ERVL RepbaseID: LTR52
>LTR53#LTR/ERVL RepbaseID: LTR53
>LTR57-int#LTR/ERVL RepbaseID: HERV57I
>LTR57#LTR/ERVL RepbaseID: LTR57
>LTR62#LTR/ERVL RepbaseID: LTR62
>LTR66#LTR/ERVL RepbaseID: LTR66
>MLT1N2#LTR/ERVL-MaLR RepbaseID: MLT1N2
>LTR69#LTR/ERVL RepbaseID: LTR69
>LTR75#LTR/ERVL RepbaseID: LTR75
>MER54A#LTR/ERVL RepbaseID: MER54A
>MER54B#LTR/ERVL RepbaseID: MER54B
>MER68-int#LTR/ERVL RepbaseID: MER68_I
>MER68#LTR/ERVL RepbaseID: MER68A
>MER70-int#LTR/ERVL RepbaseID: MER70_I
>MER70A#LTR/ERVL RepbaseID: MER70A
>MER70B#LTR/ERVL RepbaseID: MER70B
>MER73#LTR/ERVL RepbaseID: MER73
>MER74A#LTR/ERVL RepbaseID: MER74A
>MER74B#LTR/ERVL RepbaseID: MER74B
>MER74C#LTR/ERVL RepbaseID: MER74C
>MER76-int#LTR/ERVL RepbaseID: MER76-int
>MER76#LTR/ERVL RepbaseID: MER76
>MER77#LTR/ERVL RepbaseID: MER77
>MER88#LTR/ERVL RepbaseID: MER88
>MLT2A1#LTR/ERVL RepbaseID: MLT2A1
>MLT2A2#LTR/ERVL RepbaseID: MLT2A2
>MLT2B1#LTR/ERVL
>MLT2B2#LTR/ERVL RepbaseID: MLT2B2
>MLT2B3#LTR/ERVL
>MLT2B4#LTR/ERVL RepbaseID: MLT2B4
>MLT2B5#LTR/ERVL RepbaseID: MLT2B3
>MLT2C1#LTR/ERVL
>MLT2C2#LTR/ERVL RepbaseID: MLT2C2
>MLT2D#LTR/ERVL
>MLT2E#LTR/ERVL RepbaseID: MLT2E
>MLT2F#LTR/ERVL RepbaseID: MLT2F
>LTR16D1#LTR/ERVL RepbaseID: LTR16D1
>MLT1-int#LTR/ERVL-MaLR RepbaseID: MLT1CR
>MLT1A#LTR/ERVL-MaLR RepbaseID: MLT1A0
>MLT1A0#LTR/ERVL-MaLR
>MLT1A1#LTR/ERVL-MaLR RepbaseID: MLT1A1
>MLT1B#LTR/ERVL-MaLR RepbaseID: MLT1B
>MLT1C#LTR/ERVL-MaLR RepbaseID: MLT1C
>MLT1D#LTR/ERVL-MaLR RepbaseID: MLT1D
>MLT1E#LTR/ERVL-MaLR
>MLT1E1#LTR/ERVL-MaLR RepbaseID: MLT1E1
>MLT1E1A#LTR/ERVL-MaLR
>MLT1E2#LTR/ERVL-MaLR RepbaseID: MLT1E2
>MLT1E3#LTR/ERVL-MaLR
>MLT1F#LTR/ERVL-MaLR RepbaseID: MLT1F
>MLT1F-int#LTR/ERVL-MaLR
>MLT1F1#LTR/ERVL-MaLR RepbaseID: MLT1F1
>MLT1F2#LTR/ERVL-MaLR RepbaseID: MLT1F2
>MLT1G#LTR/ERVL-MaLR RepbaseID: MLT1G
>MLT1G1#LTR/ERVL-MaLR RepbaseID: MLT1G1
>MLT1G3#LTR/ERVL-MaLR RepbaseID: MLT1G3
>MLT1H#LTR/ERVL-MaLR RepbaseID: MLT1H
>MLT1H-int#LTR/ERVL-MaLR RepbaseID: MLT1H_I
>MLT1H1#LTR/ERVL-MaLR RepbaseID: MLT1H1
>MLT1H2#LTR/ERVL-MaLR RepbaseID: MLT1H2
>MLT1I#LTR/ERVL-MaLR RepbaseID: MLT1I
>MLT1J#LTR/ERVL-MaLR RepbaseID: MLT1J
>MLT1J1#LTR/ERVL-MaLR RepbaseID: MLT1J1
>MLT1J2#LTR/ERVL-MaLR RepbaseID: MLT1J2
>MLT1K#LTR/ERVL-MaLR RepbaseID: MLT1K
>MLT1L#LTR/ERVL-MaLR RepbaseID: MLT1L
>MLT-int#LTR/ERVL-MaLR RepbaseID: MLT1AR
>MST-int#LTR/ERVL-MaLR RepbaseID: MSTAR
>MSTA#LTR/ERVL-MaLR RepbaseID: MSTA
>MSTB#LTR/ERVL-MaLR RepbaseID: MSTB
>MSTB1#LTR/ERVL-MaLR RepbaseID: MSTB1
>MSTB2#LTR/ERVL-MaLR RepbaseID: MSTA2
>MSTC#LTR/ERVL-MaLR RepbaseID: MSTC
>MSTD#LTR/ERVL-MaLR RepbaseID: MSTD
>THE1-int#LTR/ERVL-MaLR RepbaseID: THE1BR
>THE1A#LTR/ERVL-MaLR RepbaseID: THE1A
>THE1B#LTR/ERVL-MaLR RepbaseID: THE1B
>THE1C#LTR/ERVL-MaLR RepbaseID: THE1C
>THE1D#LTR/ERVL-MaLR RepbaseID: THE1D
>AT_rich#Low_complexity
>GC_rich#Low_complexity
>SVA_A#Other
>SVA_B#Other
>7SK#RNA
>Eulor8#DNA/TcMar? RepbaseID: Eulor8
>7SLRNA#SINE/Alu
>AluJb#SINE/Alu
>AluJb_short_#SINE/Alu RepbaseID: AluJb
>AluJo#SINE/Alu RepbaseID: ALU
>AluSc#SINE/Alu
>AluSg#SINE/Alu
>AluSp#SINE/Alu
>AluSq#SINE/Alu
>AluSx#SINE/Alu
>AluSx_short_#SINE/Alu RepbaseID: AluSx
>AluY#SINE/Alu
>AluY_short_#SINE/Alu RepbaseID: AluY
>AluYa5#SINE/Alu
>AluYa8#SINE/Alu
>AluYb8#SINE/Alu
>AluYb9#SINE/Alu RepbaseID: AluYb9
>AluYc#SINE/Alu RepbaseID: AluYd2
>AluYc3#SINE/Alu RepbaseID: AluYd3a1
>AluYc5#SINE/Alu
>AluYd8#SINE/Alu RepbaseID: AluYd8
>AluYg6#SINE/Alu RepbaseID: AluYg6
>AluYh9#SINE/Alu RepbaseID: AluYh9
>BC200#SINE/Alu
>FAM#SINE/Alu
>FLAM_A#SINE/Alu RepbaseID: FLAM_A
>FLAM_C#SINE/Alu RepbaseID: FLAM_C
>FLAM_C_short_#SINE/Alu
>FRAM#SINE/Alu
>FRAM_short_#SINE/Alu
>MIR#SINE/MIR RepbaseID: MIR
>MIR3#SINE/MIR
>MIRb#SINE/MIR RepbaseID: MIRb
>BSR#Satellite RepbaseID: BSR
>BSRa#Satellite RepbaseID: BSRa
>BSRb#Satellite RepbaseID: BSRb
>BSRd#Satellite RepbaseID: BSRd
>BSRf#Satellite RepbaseID: BSRf
>CER#Satellite RepbaseID: CER
>D20S16#Satellite RepbaseID: D20S16
>D20S16_#Satellite RepbaseID: D20S16
>HSAT5#Satellite RepbaseID: HSAT5
>HSAT5_#Satellite RepbaseID: HSAT5
>HSAT6#Satellite RepbaseID: HSAT6
>HSATI#Satellite RepbaseID: HSATI
>HSATII#Satellite RepbaseID: HSATII
>LSAU#Satellite RepbaseID: LSAU
>MSR1#Satellite RepbaseID: MSR1
>SAR#Satellite RepbaseID: SAR
>SATR1#Satellite RepbaseID: SATR1
>SATR2#Satellite RepbaseID: SATR2
>SUBTEL_sat#Satellite
>ALRY-MAJOR_PT#Satellite/Y-chromosome RepbaseID: ALRY-MAJOR_PT
>ALRY-MINOR_PT#Satellite/Y-chromosome RepbaseID: ALRY-MINOR_PT
>ACRO1#Satellite/acromeric RepbaseID: ACRO1
>ACRO1_#Satellite/acromeric
>ALR#Satellite/centromeric
>ALR_#Satellite/centromeric
>ALRa#Satellite/centromeric RepbaseID: ALRa
>ALRa_#Satellite/centromeric RepbaseID: ALRa_
>ALRb#Satellite/centromeric
>ALRb_#Satellite/centromeric RepbaseID: ALRb
>GSAT#Satellite/centromeric RepbaseID: GSAT
>GSATII#Satellite/centromeric RepbaseID: GSATII
>GSATII_#Satellite/centromeric
>GSATX#Satellite/centromeric RepbaseID: GSATX
>GSATX_#Satellite/centromeric
>GSAT_#Satellite/centromeric
>HSAT4#Satellite/centromeric RepbaseID: HSAT4
>SST1#Satellite/centromeric RepbaseID: MER22
>REP522#Satellite/telomeric RepbaseID: REP522
>SUBTEL2_sat#Satellite/telomeric
>TAR1#Satellite/telomeric RepbaseID: TAR1
>(A)n#Simple_repeat
>(AGGGGG)n#Simple_repeat
>(CA)n#Simple_repeat
>(CAA)n#Simple_repeat
>(CAAA)n#Simple_repeat
>(CAAAA)n#Simple_repeat
>(CAAAAA)n#Simple_repeat
>(CAAAC)n#Simple_repeat
>(CAAAG)n#Simple_repeat
>(CAAAT)n#Simple_repeat
>(CAACC)n#Simple_repeat
>(CAACG)n#Simple_repeat
>(CAACT)n#Simple_repeat
>(CAAG)n#Simple_repeat
>(CAAGA)n#Simple_repeat
>(CAAGC)n#Simple_repeat
>(CAAGG)n#Simple_repeat
>(CAAGT)n#Simple_repeat
>(CAAT)n#Simple_repeat
>(CAATA)n#Simple_repeat
>(CAATC)n#Simple_repeat
>(CAATG)n#Simple_repeat
>(CAATT)n#Simple_repeat
>(CACAA)n#Simple_repeat
>(CACAC)n#Simple_repeat
>(CACAG)n#Simple_repeat
>(CACAT)n#Simple_repeat
>(CACCAT)n#Simple_repeat
>(CACCC)n#Simple_repeat
>(CACCG)n#Simple_repeat
>(CACCT)n#Simple_repeat
>(CACG)n#Simple_repeat
>(CACGA)n#Simple_repeat
>(CACGC)n#Simple_repeat
>(CACGT)n#Simple_repeat
>(CACTA)n#Simple_repeat
>(CACTC)n#Simple_repeat
>(CACTG)n#Simple_repeat
>(CACTT)n#Simple_repeat
>(CAG)n#Simple_repeat
>(CAGA)n#Simple_repeat
>(CAGAA)n#Simple_repeat
>(CAGAC)n#Simple_repeat
>(CAGAG)n#Simple_repeat
>(CAGAGA)n#Simple_repeat
>(CAGAT)n#Simple_repeat
>(CAGC)n#Simple_repeat
>(CAGCC)n#Simple_repeat
>(CAGCG)n#Simple_repeat
>(CAGCT)n#Simple_repeat
>(CAGG)n#Simple_repeat
>(CAGGA)n#Simple_repeat
>(CAGGC)n#Simple_repeat
>(CAGGG)n#Simple_repeat
>(CAGGT)n#Simple_repeat
>(CAGT)n#Simple_repeat
>(CAGTA)n#Simple_repeat
>(CAGTC)n#Simple_repeat
>(CAGTT)n#Simple_repeat
>(CAT)n#Simple_repeat
>(CATA)n#Simple_repeat
>(CATAA)n#Simple_repeat
>(CATAC)n#Simple_repeat
>(CATAG)n#Simple_repeat
>(CATAT)n#Simple_repeat
>(CATATA)n#Simple_repeat
>(CATCC)n#Simple_repeat
>(CATCG)n#Simple_repeat
>(CATCT)n#Simple_repeat
>(CATG)n#Simple_repeat
>(CATGC)n#Simple_repeat
>(CATGT)n#Simple_repeat
>(CATTA)n#Simple_repeat
>(CATTC)n#Simple_repeat RepbaseID: GGAAT
>(CATTT)n#Simple_repeat
>(CCAA)n#Simple_repeat
>(CCCA)n#Simple_repeat
>(CCCCAA)n#Simple_repeat
>(CCCCAG)n#Simple_repeat
>(CCCCG)n#Simple_repeat
>(CCCGA)n#Simple_repeat
>(CCCGAA)n#Simple_repeat
>(CCCTAA)n#Simple_repeat
>(CCCTAG)n#Simple_repeat
>(CCGAA)n#Simple_repeat
>(CCGAG)n#Simple_repeat
>(CCGCG)n#Simple_repeat
>(CCGG)n#Simple_repeat
>(CCGGA)n#Simple_repeat
>(CCGGG)n#Simple_repeat
>(CCGTA)n#Simple_repeat
>(CCTAA)n#Simple_repeat
>(CCTAT)n#Simple_repeat
>(CG)n#Simple_repeat
>(CGA)n#Simple_repeat
>(CGAA)n#Simple_repeat
>(CGAAA)n#Simple_repeat
>(CGAAG)n#Simple_repeat
>(CGAAT)n#Simple_repeat
>(CGACG)n#Simple_repeat
>(CGAG)n#Simple_repeat
>(CGAGA)n#Simple_repeat
>(CGAGG)n#Simple_repeat
>(CGAGT)n#Simple_repeat
>(CGAT)n#Simple_repeat
>(CGATA)n#Simple_repeat
>(CGG)n#Simple_repeat
>(CGGA)n#Simple_repeat
>(CGGAA)n#Simple_repeat
>(CGGAG)n#Simple_repeat
>(CGGG)n#Simple_repeat
>(CGGGA)n#Simple_repeat
>(CGGGGG)n#Simple_repeat
>(CGGT)n#Simple_repeat
>(CGTAA)n#Simple_repeat
>(CGTAG)n#Simple_repeat
>(CTAA)n#Simple_repeat
>(CTAAA)n#Simple_repeat
>(CTAAG)n#Simple_repeat
>(CTAAT)n#Simple_repeat
>(CTACT)n#Simple_repeat
>(CTAG)n#Simple_repeat
>(CTAGG)n#Simple_repeat
>(CTAGT)n#Simple_repeat
>(CTATA)n#Simple_repeat
>(CTATT)n#Simple_repeat
>(CTTAT)n#Simple_repeat
>(CTTTA)n#Simple_repeat
>(G)n#Simple_repeat
>(GA)n#Simple_repeat
>(GAA)n#Simple_repeat
>(GAAA)n#Simple_repeat
>(GAAAA)n#Simple_repeat
>(GAGAA)n#Simple_repeat
>(GGA)n#Simple_repeat
>(GGAA)n#Simple_repeat
>(GGAAA)n#Simple_repeat
>(GGAGA)n#Simple_repeat
>(GGAGAA)n#Simple_repeat
>(GGGA)n#Simple_repeat
>(GGGAA)n#Simple_repeat
>(GGGAGA)n#Simple_repeat
>(GGGGA)n#Simple_repeat
>(TA)n#Simple_repeat
>(TAA)n#Simple_repeat
>(TAAA)n#Simple_repeat
>(TAAAA)n#Simple_repeat
>(TAAAAA)n#Simple_repeat
>(TAAG)n#Simple_repeat
>(TAG)n#Simple_repeat
>(TAGA)n#Simple_repeat
>(TAGG)n#Simple_repeat
>(TAGGG)n#Simple_repeat
>(TATAA)n#Simple_repeat
>(TGAA)n#Simple_repeat
>(TGAG)n#Simple_repeat
>(TGG)n#Simple_repeat
>(TGGA)n#Simple_repeat
>(TGGGGG)n#Simple_repeat
>(TTAA)n#Simple_repeat
>(TTAAA)n#Simple_repeat
>(TTAAG)n#Simple_repeat
>(TTAGGC)n#Simple_repeat
>MER121#DNA/TcMar? RepbaseID: MER121
>5S#rRNA RepbaseID: 5S
>LSU-rRNA_Hsa#rRNA RepbaseID: LSU-rRNA_Hsa
>SSU-rRNA_Hsa#rRNA RepbaseID: SSU-rRNA_Hsa
>HY1#scRNA RepbaseID: HY1
>HY3#scRNA
>HY4#scRNA
>HY5#scRNA RepbaseID: RRNA45
>U1#snRNA
>U2#snRNA
>U3#snRNA
>U4#snRNA
>U5#snRNA RepbaseID: U5B1
>U6#snRNA RepbaseID: U6
>U7#snRNA RepbaseID: U7
>U8#snRNA RepbaseID: U8
>U13#snRNA
>U13_#snRNA
>U14#snRNA RepbaseID: U14
>U17#snRNA
>tRNA-Ala-GCA#tRNA RepbaseID: tRNA-Ala-GCA
>tRNA-Ala-GCG#tRNA
>tRNA-Ala-GCY#tRNA RepbaseID: TRNA_ALA
>tRNA-Ala-GCY_#tRNA
>tRNA-Arg-AGA#tRNA
>tRNA-Arg-AGG#tRNA
>tRNA-Arg-CGA#tRNA RepbaseID: tRNA-Arg-CGA
>tRNA-Arg-CGA_#tRNA
>tRNA-Arg-CGG#tRNA RepbaseID: tRNA-Arg-CGG
>tRNA-Arg-CGY#tRNA RepbaseID: tRNA-Arg-CGY
>tRNA-Arg-CGY_#tRNA
>tRNA-Asn-AAC#tRNA RepbaseID: TRNA_ASN
>tRNA-Asn-AAT#tRNA
>tRNA-Asp-GAY#tRNA RepbaseID: tRNA-Asp-GAY
>tRNA-Cys-TGY#tRNA
>tRNA-Gln-CAA#tRNA RepbaseID: tRNA-Gln-CAA
>tRNA-Gln-CAA_#tRNA RepbaseID: tRNA-Gln-CAA_
>tRNA-Gln-CAG#tRNA RepbaseID: tRNA-Gln-CAG
>tRNA-Glu-GAA#tRNA
>tRNA-Glu-GAG#tRNA
>tRNA-Glu-GAG_#tRNA RepbaseID: TRNA_GLU
>tRNA-Gly-GGA#tRNA
>tRNA-Gly-GGG#tRNA
>tRNA-Gly-GGY#tRNA RepbaseID: TRNA_GLY
>tRNA-His-CAY#tRNA RepbaseID: tRNA-His-CAY
>tRNA-His-CAY_#tRNA RepbaseID: tRNA-His-CAY_
>tRNA-Ile-ATA#tRNA RepbaseID: tRNA-Ile-ATA
>tRNA-Ile-ATC#tRNA RepbaseID: tRNA-Ile-ATC
>tRNA-Ile-ATT#tRNA RepbaseID: tRNA-Ile-ATT
>tRNA-Leu-CTA#tRNA RepbaseID: tRNA-Leu-CTA
>tRNA-Leu-CTA_#tRNA RepbaseID: tRNA-Leu-CTA_
>tRNA-Leu-CTG#tRNA RepbaseID: tRNA-Leu-CTG
>tRNA-Leu-CTY#tRNA RepbaseID: tRNA-Leu-CTY
>tRNA-Leu-TTA#tRNA RepbaseID: tRNA-Leu-TTA
>tRNA-Leu-TTA(m)#tRNA RepbaseID: tRNA-Leu-TTA(m)
>tRNA-Leu-TTG#tRNA RepbaseID: tRNA-Leu-TTG
>tRNA-Lys-AAA#tRNA
>tRNA-Lys-AAG#tRNA RepbaseID: tRNA-Lys-AAG
>tRNA-Met#tRNA RepbaseID: tRNA-Met
>tRNA-Met-i#tRNA RepbaseID: tRNA-Met-i
>tRNA-Met_#tRNA RepbaseID: tRNA-Met_
>tRNA-Phe-TTY#tRNA
>tRNA-Pro-CCA#tRNA RepbaseID: tRNA-Pro-CCA
>tRNA-Pro-CCG#tRNA RepbaseID: tRNA-Pro-CCG
>tRNA-Pro-CCY#tRNA
>tRNA-SeC(e)-TGA#tRNA RepbaseID: tRNA-SeC(e)-TGA
>tRNA-Ser-AGY#tRNA RepbaseID: tRNA-Ser-AGY
>tRNA-Ser-TCA#tRNA RepbaseID: tRNA-Ser-TCA
>tRNA-Ser-TCA(m)#tRNA RepbaseID: tRNA-Ser-TCA(m)
>tRNA-Ser-TCA_#tRNA RepbaseID: tRNA-Ser-TCA_
>tRNA-Ser-TCG#tRNA RepbaseID: tRNA-Ser-TCG
>tRNA-Ser-TCY#tRNA RepbaseID: tRNA-Ser-TCY
>tRNA-Thr-ACA#tRNA
>tRNA-Thr-ACG#tRNA
>tRNA-Thr-ACG_#tRNA RepbaseID: tRNA-Thr-ACG_
>tRNA-Thr-ACY#tRNA
>tRNA-Thr-ACY_#tRNA
>tRNA-Trp-TGG#tRNA
>tRNA-Tyr-TAC#tRNA RepbaseID: tRNA-Tyr-TAC
>tRNA-Tyr-TAT#tRNA RepbaseID: tRNA-Tyr-TAT
>tRNA-Val-GTA#tRNA RepbaseID: tRNA-Val-GTA
>tRNA-Val-GTG#tRNA RepbaseID: TRNA_VAL
>tRNA-Val-GTY#tRNA
>L1PREC2_3end#LINE/L1 RepbaseID: L1PREC2
>L1PREC2_5end#LINE/L1 RepbaseID: L1PREC2
>L1PREC2_orf2#LINE/L1 RepbaseID: L1PREC2
>HERV1_I#LTR/ERV1 RepbaseID: HERV15I
>HERV1_LTRa#LTR/ERV1 RepbaseID: HERV1_LTR
>HERV1_LTRb#LTR/ERV1 RepbaseID: HERV1_LTRb
>HERV1_LTRc#LTR/ERV1
>HERV1_LTRd#LTR/ERV1
>HERV1_LTRe#LTR/ERV1
>HERV4_I#LTR/ERV1 RepbaseID: HERV46I
>HERV-Fc2#LTR/ERV1 RepbaseID: HERV-Fc2
>Tigger16a#DNA/TcMar-Tigger RepbaseID: Tigger16a
>SVA_C#Other
>SVA_D#Other RepbaseID: SVA
>LTR12F#LTR/ERV1 RepbaseID: LTR12F
>MER75A#DNA/PiggyBac RepbaseID: MER75A
>MER57D#LTR/ERV1 RepbaseID: MER57D
>MER57B1#LTR/ERV1 RepbaseID: MER57B1
>MER57E1#LTR/ERV1 RepbaseID: MER57E1
>MER57C1#LTR/ERV1 RepbaseID: MER57C1
>MER57C2#LTR/ERV1 RepbaseID: MER57C2
>PTPCHT7#Satellite/telomeric
>MER102c#DNA/hAT-Charlie
>MER5C1#DNA/hAT-Charlie RepbaseID: MER5C1
>Charlie7a#DNA/hAT-Charlie
>LTR16D2#LTR/ERVL RepbaseID: LTR16D2
>LTR16B1#LTR/ERVL RepbaseID: LTR16B1
>LTR16B2#LTR/ERVL RepbaseID: LTR16B2
>LTR16E1#LTR/ERVL RepbaseID: LTR16E1
>LTR16E2#LTR/ERVL RepbaseID: LTR16E2
>MER113A#DNA/hAT-Charlie
>MLT1J-int#LTR/ERVL-MaLR RepbaseID: MLT1J-int
>Tigger10#DNA/TcMar-Tigger RepbaseID: Tigger10
>Charlie14a#DNA/hAT-Charlie
>LTR78#LTR/ERV1 RepbaseID: LTR78
>MamRep137#DNA/TcMar-Tigger RepbaseID: MamRep137
>MamRep1894#DNA/hAT RepbaseID: MamRep1894
>MamRep38#DNA/hAT RepbaseID: MamRep38
>Charlie4z#DNA/hAT-Charlie RepbaseID: MER80B
>Charlie13a#DNA/hAT-Charlie RepbaseID: Charlie13a
>Charlie13b#DNA/hAT-Charlie RepbaseID: Charlie13b
>Charlie10a#DNA/hAT-Charlie
>Charlie10b#DNA/hAT-Charlie
>Charlie15a#DNA/hAT-Charlie RepbaseID: Charlie15a
>Charlie16a#DNA/hAT-Charlie RepbaseID: Charlie16a
>Charlie17a#DNA/hAT-Charlie RepbaseID: Charlie17a
>LTR79#LTR/ERVL RepbaseID: LTR79
>Charlie18a#DNA/hAT-Charlie RepbaseID: Charlie18a
>MamRep605#LTR? RepbaseID: MamRep605
>Tigger9a#DNA/TcMar-Tigger
>ORSL-2a#DNA/hAT-Tip100 RepbaseID: ORSL-2a
>ORSL-2b#DNA/hAT-Tip100 RepbaseID: ORSL-2b
>Helitron2Na_Mam#RC?/Helitron?
>Helitron1Na_Mam#RC/Helitron
>Helitron1Nb_Mam#RC/Helitron RepbaseID: Helitron1Nb_Mam
>MamSINE1#SINE/tRNA RepbaseID: MamSINE1
>CR1_Mam#LINE/CR1 RepbaseID: CR1_Mam
>Tigger11a#DNA/TcMar-Tigger
>AmnSINE1#SINE/Deu RepbaseID: AmnSINE1_GG
>LTR41B#LTR/ERVL RepbaseID: LTR41B
>MER34A#LTR/ERV1 RepbaseID: MER34A
>MER34A1#LTR/ERV1 RepbaseID: MER34A1
>LTR33B#LTR/ERVL RepbaseID: LTR33B
>LTR33A_#LTR/ERVL
>L2c_3end#LINE/L2
>MIRc#SINE/MIR
>L1ME2z_3end#LINE/L1
>L1ME5_3end#LINE/L1 RepbaseID: L1ME5_3end
>L1MEf_5end#LINE/L1 RepbaseID: L1MEf_5end
>L1MEg_5end#LINE/L1 RepbaseID: L1MEg_5end
>Charlie19a#DNA/hAT-Charlie RepbaseID: Charlie19a
>L1M6_5end#LINE/L1 RepbaseID: L1M6_5end
>LFSINE_Vert#SINE/tRNA
>L1M7_5end#LINE/L1 RepbaseID: L1M7_5end
>Tigger15a#DNA/TcMar-Tigger RepbaseID: Tigger15a
>Tigger14a#DNA/TcMar-Tigger
>MamRep1527#LTR RepbaseID: MamRep1527
>Charlie20a#DNA/hAT-Charlie
>MamRep564#Unknown RepbaseID: MamRep564
>MamRep488#DNA/hAT-Tip100 RepbaseID: MamRep488
>LTR80A#LTR/ERVL RepbaseID: LTR80A
>LTR80B#LTR/ERVL RepbaseID: LTR80B
>LTR81A#LTR/Gypsy RepbaseID: LTR81A
>LTR81B#LTR/Gypsy RepbaseID: LTR81B
>LTR81C#LTR/Gypsy RepbaseID: LTR81C
>MamRep434#DNA/TcMar-Tigger RepbaseID: MamRep434
>Helitron3Na_Mam#RC/Helitron RepbaseID: Helitron3Na_Mam
>MamRep4096#DNA/hAT? RepbaseID: MamRep4096
>Tigger12#DNA/TcMar-Tigger RepbaseID: Tigger12
>Tigger12A#DNA/TcMar-Tigger RepbaseID: Tigger12A
>Tigger12c#DNA/TcMar-Tigger
>Charlie23a#DNA/hAT-Charlie
>Charlie21a#DNA/hAT-Charlie RepbaseID: Charlie21a
>Charlie22a#DNA/hAT-Charlie RepbaseID: Charlie22a
>Tigger13a#DNA/TcMar-Tigger RepbaseID: Tigger13a
>LTR82A#LTR/ERVL RepbaseID: LTR82A
>LTR33C#LTR/ERVL RepbaseID: LTR33C
>Tigger9b#DNA/TcMar-Tigger RepbaseID: Tigger9b
>LTR83#LTR/ERVL RepbaseID: LTR83
>LTR84a#LTR/ERVL RepbaseID: LTR84a
>LTR84b#LTR/ERVL RepbaseID: LTR84b
>MamRep1879#DNA/hAT-Tip100?
>LTR85a#LTR/Gypsy? RepbaseID: LTR85a
>LTR85b#LTR/Gypsy? RepbaseID: LTR85b
>LTR85c#LTR/Gypsy? RepbaseID: LTR85c
>MamGypLTR1b#LTR/Gypsy RepbaseID: MamGypLTR1b_LTR
>MamGypLTR1c#LTR/Gypsy RepbaseID: MamGypLTR1c_LTR
>MamGypLTR1d#LTR/Gypsy RepbaseID: MamGypLTR1d_LTR
>LTR81#LTR/Gypsy RepbaseID: MamGypLTR2_LTR
>MamGypLTR2b#LTR/Gypsy RepbaseID: MamGypLTR2b_LTR
>MamGypLTR2c#LTR/Gypsy RepbaseID: MamGypLTR2c_LTR
>MamGypLTR3#LTR/Gypsy RepbaseID: MamGypLTR3_LTR
>MamGyp-int#LTR/Gypsy
>LTR86A1#LTR/ERVL RepbaseID: LTR86A1
>LTR86A2#LTR/ERVL RepbaseID: LTR86A2
>LTR86B1#LTR/ERVL RepbaseID: LTR86B1
>LTR86B2#LTR/ERVL RepbaseID: LTR86B2
>LTR86C#LTR/ERVL RepbaseID: LTR86C
>L1MEg2_5end#LINE/L1
>L1MEg1_5end#LINE/L1
>LTR82B#LTR/ERVL RepbaseID: LTR82B
>MamGypLTR1a#LTR/Gypsy RepbaseID: MamGypLTR1a_LTR
>Charlie24#DNA/hAT-Charlie RepbaseID: Charlie24
>Kanga1d#DNA/TcMar-Tc2
>Kanga11a#DNA/TcMar-Tc2 RepbaseID: Kanga11a
>Charlie25#DNA/hAT-Charlie RepbaseID: Charlie25
>Charlie26a#DNA/hAT-Charlie RepbaseID: Charlie26a
>LTR87#LTR/ERVL? RepbaseID: LTR87
>LTR88a#LTR/Gypsy? RepbaseID: LTR88a
>LTR88b#LTR/Gypsy? RepbaseID: LTR88b
>LTR88c#LTR/Gypsy? RepbaseID: LTR88c
>LTR89#LTR/ERVL? RepbaseID: LTR89
>MLT1M#LTR/ERVL-MaLR RepbaseID: MLT1M
>L5#LINE/RTE-X
>LTR90A#LTR RepbaseID: LTR90A
>LTR90B#LTR RepbaseID: LTR90B
>Arthur1C#DNA/hAT-Tip100
>Tigger16b#DNA/TcMar-Tigger RepbaseID: Tigger16b
>HERV-Fc2_LTR#LTR/ERV1
>HERV-Fc1_LTR1#LTR/ERV1
>HERV-Fc1_LTR2#LTR/ERV1
>HERV-Fc1_LTR3#LTR/ERV1
>HERV-Fc1#LTR/ERV1 RepbaseID: HERV-Fc1
>HERVE_a#LTR/ERV1 RepbaseID: HERVE_a
>L1ME3C_3end#LINE/L1 RepbaseID: L1ME3C_3end
>L1ME3D_3end#LINE/L1 RepbaseID: L1ME3D_3end
>L1ME3E_3end#LINE/L1 RepbaseID: L1ME3E_3end
>L1ME3F_3end#LINE/L1 RepbaseID: L1ME3F_3end
>Plat_L3#LINE/CR1 RepbaseID: Plat_L3
>Mam_R4#LINE/Dong-R4 RepbaseID: Plat_R4
>Eulor9A#DNA RepbaseID: Eulor9A
>Eulor9B#DNA RepbaseID: Eulor9B
>Eulor9C#DNA RepbaseID: Eulor9C
>Eulor2A#DNA? RepbaseID: Eulor2A
>Eulor2B#DNA? RepbaseID: Eulor2B
>Eulor2C#DNA? RepbaseID: Eulor2C
>Eulor11#DNA RepbaseID: Eulor11
>Eulor1#DNA RepbaseID: Eulor1
>MER126#DNA RepbaseID: MER126
>Eulor10#DNA? RepbaseID: Eulor10
>MER127#DNA/TcMar-Tigger RepbaseID: MER127
>MER131#SINE? RepbaseID: MER131
>MER125#DNA RepbaseID: MER125
>MER129#LTR? RepbaseID: MER129
>Eulor3#DNA? RepbaseID: Eulor3
>Eulor4#Unknown RepbaseID: Eulor4
>Eulor5B#DNA? RepbaseID: Eulor5B
>Eulor5A#DNA? RepbaseID: Eulor5A
>Eulor6A#DNA? RepbaseID: Eulor6A
>Eulor6D#DNA? RepbaseID: Eulor6D
>Eulor6E#DNA? RepbaseID: Eulor6E
>Eulor6C#DNA? RepbaseID: Eulor6C
>Eulor6B#DNA? RepbaseID: Eulor6B
>Eulor7#DNA? RepbaseID: Eulor7
>Eulor12#DNA? RepbaseID: Eulor12
>MER130#Unknown RepbaseID: MER130
>MER123#DNA RepbaseID: MER123
>MER136#DNA RepbaseID: MER136
>MER134#DNA? RepbaseID: MER134
>MER132#DNA/TcMar-Pogo RepbaseID: MER132
>MER133B#DNA? RepbaseID: MER133B
>MER133A#DNA? RepbaseID: MER133A
>MER124#DNA? RepbaseID: MER124
>MER135#DNA RepbaseID: MER135
>MERX#DNA/TcMar-Tigger RepbaseID: MERX
>MER97d#DNA/hAT-Tip100 RepbaseID: MER97d
>Zaphod3#DNA/hAT-Tip100 RepbaseID: Zaphod3
>UCON11#Unknown RepbaseID: UCON11
>UCON17#Unknown RepbaseID: UCON17
>UCON28a#Unknown RepbaseID: UCON28a
>UCON1#Unknown RepbaseID: UCON1
>UCON27#Unknown RepbaseID: UCON27
>UCON31#Unknown RepbaseID: UCON31
>UCON16#Unknown RepbaseID: UCON16
>UCON19#Unknown RepbaseID: UCON19
>UCON22#Unknown RepbaseID: UCON22
>UCON21#DNA? RepbaseID: UCON21
>UCON5#Unknown RepbaseID: UCON5
>UCON10#Unknown RepbaseID: UCON10
>UCON18#Unknown RepbaseID: UCON18
>UCON4#Unknown RepbaseID: UCON4
>UCON7#DNA? RepbaseID: UCON7
>UCON2#Unknown RepbaseID: UCON2
>UCON26#Unknown RepbaseID: UCON26
>UCON23#DNA/hAT? RepbaseID: UCON23
>AmnSINE2#SINE/Deu RepbaseID: UCON3
>UCON6#Unknown RepbaseID: UCON6
>UCON29#DNA/PiggyBac? RepbaseID: UCON29
>UCON12#Unknown RepbaseID: UCON12
>UCON9#Unknown RepbaseID: UCON9
>UCON15#Unknown RepbaseID: UCON15
>UCON13#LINE?/Penelope? RepbaseID: UCON13
>UCON24#Unknown RepbaseID: UCON24
>UCON20#Unknown RepbaseID: UCON20
>UCON25#Unknown RepbaseID: UCON25
>UCON14#DNA? RepbaseID: UCON14
>UCON8#Unknown RepbaseID: UCON8
>UCON28b#Unknown RepbaseID: UCON28b
>UCON28c#Unknown RepbaseID: UCON28c
>UCON12A#Unknown RepbaseID: UCON12A
>X1_LINE#LINE/CR1 RepbaseID: X1_LINE
>X7C_LINE#LINE/CR1 RepbaseID: X7C_LINE
>X6B_LINE#LINE/CR1 RepbaseID: X6B_LINE
>X2_LINE#LINE/CR1 RepbaseID: X2_LINE
>X8_LINE#LINE/CR1 RepbaseID: X8_LINE
>X9_LINE#LINE/L1? RepbaseID: X9_LINE
>X5A_LINE#LINE/CR1 RepbaseID: X5A_LINE
>X5B_LINE#LINE/CR1 RepbaseID: X5B_LINE
>X6A_LINE#LINE/CR1 RepbaseID: X6A_LINE
>X7B_LINE#LINE/CR1 RepbaseID: X7B_LINE
>X7A_LINE#LINE/CR1 RepbaseID: X7A_LINE
>X7D_LINE#LINE/CR1 RepbaseID: X7D_LINE
>X3_LINE#LINE/RTE-BovB RepbaseID: X3_LINE
>MER87B#LTR/ERV1 RepbaseID: MER87B
>LTR35B#LTR/ERV1 RepbaseID: LTR35B
>MER77B#LTR/ERVL RepbaseID: LTR77B
>MER34C2#LTR/ERV1 RepbaseID: MER34C2
>PrimLTR79#LTR/ERV1 RepbaseID: PrimLTR79
>MER57E3#LTR/ERV1 RepbaseID: MER57E3
>MER113B#DNA/hAT-Charlie RepbaseID: MER113B
>MER94B#DNA/hAT-Blackjack RepbaseID: MER94B
>MER68B#LTR/ERVL RepbaseID: MER68B
>LTR35A#LTR/ERV1 RepbaseID: LTR35A
>MER103C#DNA/hAT-Charlie RepbaseID: MER103C
>LTR40A1#LTR/ERVL RepbaseID: LTR40A1
>LTR7C#LTR/ERV1 RepbaseID: LTR7C
>ERV3-16A3_I#LTR/ERVL RepbaseID: ERV3-16A3_I
>ERV3-16A3_LTR#LTR/ERVL RepbaseID: ERV3-16A3_LTR
>DNA1_Mam#DNA/TcMar RepbaseID: DNA1_Mam
>MER50C#LTR/ERV1 RepbaseID: MER50C
>LTR16A2#LTR/ERVL RepbaseID: LTR16A2
>LTR78B#LTR/ERV1 RepbaseID: LTR78B
>LTR75B#LTR/ERVL RepbaseID: LTR75B
>MER66D#LTR/ERV1 RepbaseID: MER66D
>LTR67B#LTR/ERVL RepbaseID: LTR67B
>MER9a1#LTR/ERVK RepbaseID: MER9a1
>MER9a2#LTR/ERVK RepbaseID: MER9a2
>MER9a3#LTR/ERVK RepbaseID: MER9a3
>AluJr#SINE/Alu
>AluJr4#SINE/Alu
>AluSz#SINE/Alu RepbaseID: AluSz
>AluSz6#SINE/Alu
>AluSx1#SINE/Alu
>AluSx3#SINE/Alu
>AluSx4#SINE/Alu
>AluSc8#SINE/Alu
>AluSc5#SINE/Alu
>AluYf4#SINE/Alu RepbaseID: AluYe5
>AluYf5#SINE/Alu
>AluYk4#SINE/Alu RepbaseID: AluYb3a2
>AluYk12#SINE/Alu
>AluYk11#SINE/Alu
>AluSg4#SINE/Alu
>AluSg7#SINE/Alu
>AluSq2#SINE/Alu
>AluSq10#SINE/Alu
>AluSq4#SINE/Alu
>LTR1B1#LTR/ERV1 RepbaseID: LTR1B1
>LTR1B0#LTR/ERV1
>LTR1C5#LTR/ERV1
>LTR1C4#LTR/ERV1
>LTR1A1#LTR/ERV1
>LTR1A2#LTR/ERV1
>LTR1C1#LTR/ERV1
>LTR53B#LTR/ERVL RepbaseID: LTR53B
>LTR22B1#LTR/ERVK RepbaseID: LTR22B1
>LTR38A1#LTR/ERV1 RepbaseID: LTR38A1
>LTR06#LTR/ERV1 RepbaseID: LTR06
>LTR60B#LTR/ERV1 RepbaseID: LTR60B
>LTR28B#LTR/ERV1 RepbaseID: LTR28B
>LTR27C#LTR/ERV1 RepbaseID: LTR27C
>LTR9A1#LTR/ERV1 RepbaseID: LTR9A1
>LTR9D#LTR/ERV1 RepbaseID: LTR9D
>LTR22E#LTR/ERVK RepbaseID: LTR22E
>LTR18C#LTR/ERVL RepbaseID: LTR18C
>LTR10B2#LTR/ERV1 RepbaseID: LTR10B2
>MER4CL34#LTR/ERV1 RepbaseID: MER4CL34
>LTR9C#LTR/ERV1 RepbaseID: LTR9C
>LTR1F#LTR/ERV1 RepbaseID: LTR1F
>LTR1F1#LTR/ERV1
>LTR1F2#LTR/ERV1
>LTR1C3#LTR/ERV1
>LTR1E#LTR/ERV1 RepbaseID: LTR1E
>LTR1D1#LTR/ERV1
>LTR47A2#LTR/ERVL RepbaseID: LTR47A2
>LTR47B2#LTR/ERVL RepbaseID: LTR47B2
>LmeSINE1c#SINE/Deu RepbaseID: LmeSINE1c
>LTR27D#LTR/ERV1 RepbaseID: LTR27D
>LTR28C#LTR/ERV1 RepbaseID: LTR28C
>LTR2752#LTR/ERV1 RepbaseID: LTR2752
>LTR41C#LTR/ERVL RepbaseID: LTR41C
>LTR16#LTR/ERVL RepbaseID: LTR16
>MSTA1#LTR/ERVL-MaLR RepbaseID: MSTA1
>MER68C#LTR/ERVL RepbaseID: MER68C
>PB1D11#SINE/Alu RepbaseID: PB1D11
>LTR22C0#LTR/ERVK RepbaseID: LTR22C0
>L1M6B_5end#LINE/L1 RepbaseID: L1M6B_5end
>Tigger5b#DNA/TcMar-Tigger RepbaseID: TIGGER5_B
>Tigger17#DNA/TcMar-Tigger
>Tigger17a#DNA/TcMar-Tigger
>Tigger17b#DNA/TcMar-Tigger
>Tigger17c#DNA/TcMar-Tigger
>L4_A_Mam#LINE/RTE-X
>L4_B_Mam#LINE/RTE-X
>L4_C_Mam#LINE/RTE-X
>LTR101_Mam#LTR/ERVL
>MamTip1#DNA/hAT-Tip100
>MamRep1151#LTR?
>Tigger18a#DNA/TcMar-Tigger
>Charlie29a#DNA/hAT-Charlie
>LTR102_Mam#LTR/ERVL
>Tigger19a#DNA/TcMar-Tigger
>L1MEh_5end#LINE/L1
>LTR103_Mam#LTR/ERV1?
>LTR104_Mam#LTR/Gypsy
>Tigger20a#DNA/TcMar-Tigger
>hAT-N1_Mam#DNA/hAT?
>Chap1_Mam#DNA/hAT-Charlie
>MamTip2#DNA/hAT-Tip100
>LTR105_Mam#LTR/ERVL
>LTR106_Mam#LTR
>LTR107_Mam#LTR
>MamGypLTR3a#LTR/Gypsy
>Charlie17b#DNA/hAT-Charlie
>Charlie17#DNA/hAT-Charlie
>MamTip3#DNA/hAT-Tip100
>L1M8_5end#LINE/L1
>HAL1M8#LINE/L1
>Charlie15b#DNA/hAT-Charlie
>LTR108a_Mam#LTR/ERVL
>LTR108c_Mam#LTR/ERVL
>LTR108d_Mam#LTR/ERVL
>LTR108e_Mam#LTR/ERVL
>LTR108b_Mam#LTR/ERVL
>L1MEi_5end#LINE/L1
>L1MEj_5end#LINE/L1
>L1M4a1_5end#LINE/L1
>L1M4a2_5end#LINE/L1
>MLT1O#LTR/ERVL-MaLR
>L1ME3Cz_3end#LINE/L1
>L1ME4b_3end#LINE/L1
>L1MC5a_3end#LINE/L1
>L1ME4c_3end#LINE/L1
>LTR103b_Mam#LTR/ERV1?
>L1ME3G_3end#LINE/L1
>LTR109A2#LTR/ERV1
>MER92D#LTR/ERV1
>LTR37-int#LTR/ERV1
>MER92-int#LTR/ERV1
>HAL1ME#LINE/L1
>LTR91#LTR/ERVL RepbaseID: LTR91