OMIM track(s) in .bed files

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Condie E. Carmack

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Aug 5, 2014, 12:21:35 PM8/5/14
to gen...@soe.ucsc.edu

Hi-

 

How do I open the OMIM tracks in a bed file?

 

I have tried

 

Browser dense omimgene

 

I know there are three OMIM tracks.

 

But that does not seem to work.

 

Thanks,

Condie Carmack


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Robert Kuhn

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Aug 5, 2014, 1:15:11 PM8/5/14
to Condie E. Carmack, UCSC Genome Browser Mailing List, Robert Kuhn
Hi, Condie,

Good to hear from you, and happy to see you are still using the Genome
Browser!

Ordinarily, to get BED output from a track, you would go to the Table Browser,
select the track/table from the pulldown menus and then choose the appropriate
output format for your table.  Our processing of OMIM content does result in BED
files which underlie the tracks yo uee in teh Browser, but our agreement with them
is that we cannot redistribute their content via the Table Browser or downloads. 

We do upload our tables back to OMIM, however, where they make them available
to their customers via ftp.  Please contact them through omim.org.

best wishes and good luck in your work,

     --b0b

Robert Kuhn
UCSC Genome Bioinformatics Group





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