Pichard Liftover from UOA_WB_1 to NDDB_SH_1

[Akanksha Kesharwani]

Dear Sir/Ma'am

I want to convert my Buffalo VCF file from the UOA_WB_1 assembly build to the NDDB_SH_1 build. Please provide me .chain.gz files for this conversion.

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Regards,

Akanksha Kesharwani

[Gerardo Perez]

Hello, Akanksha.

Thank you for your interest in the Genome Browser.

The UOA_WB_1 (GCF_003121395.1) to NDDB_SH_1 (GCF_019923935.1) liftOver chain files are available on our downloads server:

UOA_WB_1 (GCF_003121395.1) -> NDDB_SH_1 (GCF_019923935.1):
https://hgdownload.soe.ucsc.edu/hubs/GCF/003/121/395/GCF_003121395.1/liftOver/GCF_003121395.1ToGCF_019923935.1.over.chain.gz

NDDB_SH_1 (GCF_019923935.1) -> UOA_WB_1 (GCF_003121395.1):
https://hgdownload.soe.ucsc.edu/hubs/GCF/019/923/935/GCF_019923935.1/liftOver/GCF_019923935.1ToGCF_003121395.1.over.chain.gz

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute

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