21 February 2018 at 18:34
Hello Mike,
Thanks for the note about hgdownload-euro, there was indeed an error
on our end, which should be resolved now. Can you please try again and
let us know if everything is working?
Please let us know if you have any further questions!
Thanks,
Christopher Lee
UCSC Genomics Institute
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On Wed, Feb 21, 2018 at 6:01 AM, Mike Rightmire
21 February 2018 at 15:01
Hey,
So I'm using a manual rsync to download the /gbdb and /mysql files from the european server.
I'm noting in the output from rsync a lot of permission denied errors...
+ rsync --progress -avzp hgdownload-euro.soe.ucsc.edu::mysql/mm10/ /var/lib/mysql//mm10/
receiving incremental file list
./
rsync: send_files failed to open "/mm10/all_mrna.MYD" (in mysql): Permission denied (13)
(snip)
rsync: send_files failed to open "/mm10/xenoRefSeqAli.MYI" (in mysql): Permission denied (13)
sent 1,065,941 bytes received 88,990 bytes 18,478.90 bytes/sec
total size is 202,551,408,665 speedup is 175,379.66
rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1655) [generator=3.1.1]
+ rsync --progress -avp hgdownload-euro.soe.ucsc.edu::gbdb/mm10/ /gbdb-data1//mm10/
receiving incremental file list
It doesn't SEEmM to be on my end (I can't find these files on my server). Is this an issue on the server side?
Thanks!
Mike
Hi Mike,
The numeric owner:group is expected and you should perform the chown after the download as you are already doing.
Please let us know if you have any further questions!
Thanks,
Christopher Lee
UCSC Genomics Institute
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