[genome-mirror] v436 Genome Browser Available

[Christopher Lee]

Good Morning Genome Browser Mirror Site Operators:

The version v436 source is now available at:
http://hgdownload.soe.ucsc.edu/admin/jksrc.zip

or labeled with version number:
http://hgdownload.soe.ucsc.edu/admin/jksrc.v436.zip

The version v436 CGI binaries can be found at:
rsync -avP rsync://hgdownload.soe.ucsc.edu/cgi-bin/ ${WEBROOT}/cgi-bin/
or: ftp://hgdownload.soe.ucsc.edu/apache/cgi-bin/

A license is required for commercial download and/or installation of
the Genome Browser binaries and source code. No license is needed for
academic, nonprofit, and personal use. See also:
https://genome.ucsc.edu/license/

See also: http://genome.ucsc.edu/goldenPath/help/mirror.html

*********************************************************************
***** The genome browser system can be installed on a linux system
NOTE: with the 'GBiC' script (Genome Browser in the Cloud) from
***** the 'Genome Store': https://genome-store.ucsc.edu/
***** See also: https://genome.ucsc.edu/goldenpath/help/gbic.html

***** The genome browser system can be used in a Virtual Box VM
NOTE: image from the 'Genome Store': https://genome-store.ucsc.edu/
***** See also: https://genome.ucsc.edu/goldenPath/help/gbib.html

*********************************************************************

August 2018 note: v369 was the last build to take place in our CentOS 6.8
environment; builds are now on CentOS 7.5. Copies of v369 binaries will be
maintained for a while at
ftp://hgdownload.soe.ucsc.edu/apache/cgi-bin.v369/ and
http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v369/.

*********************************************************************

Summaries of changes for this version update can be found here:

http://genecats.soe.ucsc.edu/builds/versions-all/v436.html

The following CGIs were updated:

cartDump cartReset das hgApi hgBlat hgCollection hgConvert hgCustom
hgEncodeApi hgEncodeDataVersions hgEncodeVocab hgFileSearch hgFileUi
hgGateway hgGene hgGeneGraph hgGenome hgGtexTrackSettings hgHubConnect
hgIntegrator hgLiftOver hgLinkIn hgLogin hgMenubar hgMirror hgNear hgPal
hgPcr hgPublicSessions hgRenderTracks hgSession hgSuggest hgTables hgTrackUi
hgTracks hgUserSuggestion hgVai hgVisiGene hgc hubApi
lsSnpPdbChimera.py phyloPng

and these configuration files:

/usr/local/apache/cgi-bin/all.joiner
/usr/local/apache/cgi-bin/encode/cv.ra
/usr/local/apache/cgi-bin/extTools.ra
/usr/local/apache/cgi-bin/greatData/*
/usr/local/apache/cgi-bin/hgCgiData/*
/usr/local/apache/cgi-bin/hgGeneData/*
/usr/local/apache/cgi-bin/hgNearData/*
/usr/local/apache/cgi-bin/hgcData/*
/usr/local/apache/cgi-bin/loader/*
/usr/local/apache/cgi-bin/pyLib/*
/usr/local/apache/cgi-bin/visiGeneData/*

Please rsync --delete these directories:

/usr/local/apache/htdocs/js/*
/usr/local/apache/htdocs/style/*

The script in the source tree: src/product/scripts/updateHtml.sh
can be used to update your htdocs directory with the correct delete
operation on /js/ and /style/ directories.

A new hgcentral.sql file is available at:
http://hgdownload.soe.ucsc.edu/admin/hgcentral.sql

If you have any questions or concerns, please feel free to write back
to this genome-mirror mail list.

ChrisL
UCSC Genomics Institute