Question about GBiC installation

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PYG

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Feb 10, 2022, 7:19:29 PM2/10/22
to genome...@soe.ucsc.edu
To whom it my concern

I am a bioinformatician in korea.
I am writing to inquire about The UCSC Genome Browser installation.

I got the following error while installing GBiC on VM instance of google cloud platform. 
 - Exit error 23 occurred on line 1.
 - The UCSC Genome Browser installation script exited with an error.
Please check the attached file for details.

I'm not expert in the relevant field, so i'm asking for help.
I'm looking forward to hearing from you.

Sincerely

debug.log

Gerardo Perez

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Feb 11, 2022, 6:55:21 PM2/11/22
to PYG, genome-mirror

Hello,

Thank you for your interest in the Genome Browser and your question about a GBiC installation error.

To better assist you, could you provide the command you ran?

From the debug.log you shared with us, it looks like you had a typo when trying to mirror mm9:

+ downloadGenomes mm9 1
+ DBS='mm9 1'

The mm9's download was successful, but there isn't a '1' database, so the following rsync failed:

rsync -avn hgdownload.soe.ucsc.edu::mysql/1/ /var/lib/mysql/1/

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute


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