broken docker container for v477

[Hoover, David (NIH/CIT) [E]]

Hi,

I tried to build a docker container with the most recent version (v477) using the standard instructions. Unfortunately, the menubar does not show and the main page is broken.

The executables were built with a later version of GLIBC than is available in the docker container.

root@29e36885f5b5:/# ldd --version
ldd (Ubuntu GLIBC 2.31-0ubuntu9.17) 2.31

root@29e36885f5b5:/# ldd /usr/local/apache/cgi-bin/hgGateway
/usr/local/apache/cgi-bin/hgGateway: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found (required by /usr/local/apache/cgi-bin/hgGateway)
/usr/local/apache/cgi-bin/hgGateway: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.33' not found (required by /usr/local/apache/cgi-bin/hgGateway)
/usr/local/apache/cgi-bin/hgGateway: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by /usr/local/apache/cgi-bin/hgGateway)

Is there a way of updating the GLIBC version for this container?

David
--
David Hoover, Ph.D.
Computational Biologist
High Performance Computing Services,
Center for Information Technology,
National Institutes of Health
12 South Dr., Rm 2N207
Bethesda, MD 20892, USA
TEL: (+1) 301-435-2986
Email: hoov...@hpc.nih.gov

[Hiram Clawson]

Good Evening David:

What is the combination we are working with here, are these new
binaries from our hgdownload server and they are complaining about
not finding the newer versions of GLIBC they are expecting ?

And is this a docker container you made or obtained from
UCSC or somewhere else ?

I would guess that if the docker installation is too old
to operate the binaries, you would need a newer installation ?

--Hiram

On 2/23/25 2:20 PM, 'Hoover, David (NIH/CIT) [E]' via UCSC Genome Browser

[Maximilian Haeussler]

Hi David,

sorry for the problems, we're looking into fixing this, I hope we have a fix for you within days. 

best

Max

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[Luis Nassar]

Hi, David.

We wanted to share a short update. We're still investigating it and should have something this week.

Lou Nassar

UCSC Genome Browser.

To view this discussion visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome-mirror/CAHm%3D4fycMgdgR7u8BCREMi%2B_XgRihAq-tRai360H-SsGNYKmww%40mail.gmail.com.

[Luis Nassar]

Hi, David.

We're still looking into this. We hope to have a fix in place soon.

Lou Nassar
UCSC Genome Browser