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Hello,
Thank you for using the UCSC Genome Browser and sending the JavaScript console errors.
The problem is that the hgGateway CGI cannot find your custom dbDbTaxonomy.js file since you defined the absolute path in the hg.conf file:hgGateway.dbDbTaxonomy=/usr/local/apache/htdocs/js/dbDbTaxonomy.js
The solution is to use a relative path to the dbDbTaxonomy.js file in your hg.conf file:hgGateway.dbDbTaxonomy=../js/dbDbTaxonomy.js
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
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Jairo Navarro
UCSC Genome Browser
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Hello,
We can point you to our makedoc that has instructions for making the tree: https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/dbDbTaxonomy.txt
These instructions with commands were made for internal replication, so you would need to replace hgcentraltest
with hgcentral
and replace the old date string (set date = 2016_04_18
). If you have added genomes to dbDb with dbDb.taxId set to real NCBI Taxonomy IDs, then the instructions should work. Let us know if you encounter any errors and we can help you debug them.
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Gerardo Perez
UCSC Genome Browser
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