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Ashton, John

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Nov 17, 2022, 3:10:22 PM11/17/22
to genome...@soe.ucsc.edu

Hi,

 

We are trying to setup a local mirror at our institution and are running into some concerns over the older versions of MySQL and python. Do you have any work around for this?

 

Thanks,
John

 

 

John M Ashton, PhD., MBA.

Assistant Professor

Department of Biomedical Genetics

Wilmot Cancer Institute Member

Director, Genomics Research Center

Director, Functional Genomics Resource

Director, Wilmot Cancer Institute Shared Scientific Resources

CART / Center for Advanced Research Technologies

CBI / Center for Biomedical Informatics

Pronouns: he/him/his

James P. Wilmot Cancer Institute, RM 3-0771F

University of Rochester

601 Elmwood Ave.

Box 704

Rochester, NY 14642

 

Office: (585) 275-7276

Email: John_...@urmc.rochester.edu

Website: grc-srl.urmc.edu

 

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Hiram Clawson

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Nov 17, 2022, 3:15:53 PM11/17/22
to genome...@soe.ucsc.edu
Good Afternoon Dr. Ashton:

Can you clarify what your concerns are regarding versions ?
Do you mean you are using older versions of MySQL ?

We are currently running with: version 10.6.8-MariaDB
for MySQL.

And for python, we generally aim for python 2.7 compatibility.

--Hiram

On 11/17/22 12:00 PM, Ashton, John wrote:
> Hi,
>
> We are trying to setup a local mirror at our institution and are running into some concerns over the older versions of MySQL and python. Do you have any work around for this?
>
> Thanks,
> John
>
>
> John M Ashton, PhD., MBA.
> Assistant Professor
> Department of Biomedical Genetics
> Wilmot Cancer Institute Member
> Director, Genomics Research Center
> Director, Functional Genomics Resource
> Director, Wilmot Cancer Institute Shared Scientific Resources
> CART / Center for Advanced Research Technologies
> CBI / Center for Biomedical Informatics
> Pronouns: he/him/his
> James P. Wilmot Cancer Institute, RM 3-0771F
> University of Rochester
> 601 Elmwood Ave.
> Box 704
> Rochester, NY 14642
>
> Office: (585) 275-7276
> Email: John_...@urmc.rochester.edu<mailto:John_...@urmc.rochester.edu>
> Website: grc-srl.urmc.edu<applewebdata://337B0CED-50A1-440C-BE2F-F45FA578E1B2/grc-srl.urmc.edu>
>
> [signature_3143056]

Maximilian Haeussler

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Nov 17, 2022, 4:05:57 PM11/17/22
to Hiram Clawson, genome...@soe.ucsc.edu
Hi John,

Are you aware of the gbic installation script that we provide ? And the GBIB virtual machine ?

 Best
Max

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