extracting genomic regions -2kb and +500kb from the TSS of a gene

[#LAI KEI ONN#]

Hello UCSC genome browser team

I'm trying to extract core promoter regions of all my genes (in mgi_symbol format) from a gene list.

so far i've only managed to extract the genomic coordinates of my genes but not up and downstream regions inclusive of

the cds.

is there a way i can extract genomic regions -2kb and +500kb from the TSS of all my genes a gene list?

thanks

Best Regards

Kei Onn LAI|黎啟諳

Lee Kong Chian School of Medicine

[Gerardo Perez]

Hello, Kei.

Thank you for your interest in the Genome Browser and for your question about extracting genomic regions -2kb and +500kb from the TSS of a gene. Please see this answer to a previous mailing list question for information on getting these sequences:
https://groups.google.com/a/soe.ucsc.edu/g/genome/c/RebB1hzAKdA/m/Ys7ZNFrr33sJ

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute

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