Updated Chain/Net tracks for Mouse (mm39/GRCm39)
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Gerardo Perez
Mar 31, 2021, 7:32:39 PM3/31/21
to genome-...@soe.ucsc.edu
Hello Everyone,
We are pleased to announce the update to the Chain/Net tracks for the recently released mouse assembly mm39/GRCm39. The chain track shows alignments of the mouse assembly to 29 other organisms using a gap scoring system that allows longer gaps than traditional affine gap scoring systems. The net track shows the best mouse/other chain for every part of the other genome.
- Bonobo (panPan3)
- Bushbaby (otoGar3)
- Chicken (galGal6)
- Chimp (panTro6)
- Chinese pangolin (manPen1)
- Cow (bosTau9)
- Dolphin (turTru2)
- Elephant (loxAfr3)
- Gorilla (gorGor6)
- Guinea pig (cavPor3)
- Hawaiian monk seal (neoSch1)
- Hedgehog (eriEur2)
- Horse (equCab3)
- Lamprey (petMar3)
- Malayan flying lemur (galVar1)
- Opossum (monDom5)
- Pig (susScr3)
- Pika (ochPri3)
- Rabbit (oryCun2)
- Rat (rn6)
- Rhesus (rheMac10)
- Sheep (oviAri4)
- Shrew (sorAra2)
- Squirrel (speTri2)
- Tarsier (tarSyr2)
- Tenrec (echTel2)
- Tree shrew (tupBel1)
- X. tropicalis (xenTro9)
- Zebrafish (danRer11)
We would like to thank Angie Hinrichs, Hiram Clawson, Lou Nassar, and Gerardo Perez for the development and release of these tracks.
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