[genome-announce] GENCODE Genes v39 for human (hg38)

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Jairo Navarro Gonzalez

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Feb 10, 2022, 6:30:43 PMFeb 10
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Hello everyone,

We are happy to announce the release of the GENCODE Genes v39 track for the human (GRCh38/hg38) genome assembly. The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes are not displayed by default. It contains annotations on the reference chromosomes as well as assembly patches and alternative loci (haplotypes).

GENCODE v39 Release Stats
GenesObservedTranscriptsObserved
Protein-coding genes19,982Protein-coding transcripts87,151
Long non-coding RNA genes18,811- full length protein-coding61,516
Small non-coding RNA genes7,567- partial length protein-coding25,635
Pseudogenes14,763Nonsense mediated decay transcripts19,762
Immunoglobulin/T-cell receptor gene segments409Long non-coding RNA loci transcripts53,009

More details about the GENCODE Genes v39 track can be found on the track description page.

We would like to thank the GENCODE Project for providing the data. 

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