discontinuous density plot

[Bina, Minou]

Hello,

 

I have a set of data to display as a non continuous  density plot

 I am having to write the header to create a custom track

I have not been able to get it to work

 

browser position chr11:1-135006516
browser full altGraph
track type=wiggle_0 track name="Dens" description="Density of ZFBS_morph overlaps" visibility=full db=hg19 autoScale=off viewLimits=0.0:20 color=165,42,42 yLineMark=1 yLineonoff=on priority=100
variableStep chrom=chr11 span=1

 

Please help to resolve this

Thank you

 

Minou Bina

Purdue University

[Chris Villarreal]

Dear Minou Bina,

Thank you for your question about the UCSC Genome Browser. 
Could you please describe the issue more specifically or provide us with any error messages you are receiving? 
It will also help if you include an example of the data you are using.

If you have any further questions, please reply 
to gen...@soe.ucsc.edu. All messages sent to that address are archived 
on a publicly-accessible Google Groups forum. If your question includes 
sensitive data, you may send it instead to genom...@soe.ucsc.edu.

-Chris V

UCSC Genome Browser

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[Bina, Minou]

Hello, Thank you for responding

The output of my analysis consists of two columns: genome-position and count  

(file attached, for chr11 hg19)

 

I just need to view the result on the genome browser as a bar graph, without have to do additional programming

 

Regards,

 

Minou Bina

Purdue University  

 

 

---

From: Chris Villarreal <cjvi...@ucsc.edu>
Sent: Thursday, September 1, 2016 6:08 PM
To: Bina, Minou
Cc: gen...@soe.ucsc.edu
Subject: Re: [genome] discontinuous density plot

 

[Cath Tyner]

Hello Minou,

I have added your track line information to the top of the file you attached and I was able to successfully load the file as a custom track

​ in hg19​

. If you haven't already done so, please try adding the following to the top of your file and try loading the custom track again.

browser position chr11:1-135006516
browser full altGraph
track type=wiggle_0 track name="Dens" description="Density of ZFBS_morph overlaps" visibility=full db=hg19 autoScale=off viewLimits=0.0:20 color=165,42,42 yLineMark=1 yLineonoff=on priority=100
variableStep chrom=chr11 span=1

​If that doesn't work, please respond to this list with further details, including any error messages that you are seeing.​

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. . .

Cath Tyner

UCSC Genome Browser, Software QA & User Support

UC Santa Cruz Genomics Institute

UCSC Genome Browser