Building local sacCer3 browser problems

[Tomas Vinar]

Hello, I am trying to build a mirror of sacCer3 browser for local use, but I am missing some tables on the FTP site. In particular at: ftp://hgdownload.cse.ucsc.edu/mysql/sacCer3/ I am missing gbCdnaInfo table, which results in numerous errors throughout the browser. Any suggestions?

Thanks,

Tomas

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Tomas Vinar, Associate Professor
Associate Dean for Information Technologies
Department of Applied Informatics
Faculty of Mathematics, Physics, and Informatics
Comenius University, Bratislava
E-mail: tomas...@fmph.uniba.sk
Office: M163
Work Phone: +421-2-60295207

[Cath Tyner]

Hello Tomas, 

Thank you for contacting the UCSC Genome Browser support team. As of June 2016, the location of metadata tables that support the GenBank and RefSeq tracks (RefSeq, Other RefSeq, mRNA, EST, etc.) have been moved from directories of individual assemblies to one global database, hgFixed, as described in this FAQ. 

Please respond to this list if you have further questions!

Thank you for contacting the UCSC Genome Browser support team. 

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​Enjoy,​

Cath
. . .

Cath Tyner

UCSC Genome Browser, Software QA & User Support

UC Santa Cruz Genomics Institute

UCSC Genome Browser

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