I am interested in SINE/LINE element and in the repClass it gives the
info whether it belongs to SINE or LINE. However, in the repName column
there are different names for these elements.
For instance, to list a few names in the LINE class:
This file contains species indication and repeat identifier as seen from this grep: egrep "RepbaseID:|Species:" RepeatMaskerLib.embl
The version we have been using in recent times is from 31 Jan 2014 '20140131'.
If you have any further questions, please reply to
gen...@soe.ucsc.edu. All messages sent to that address are
archived on a publicly-accessible forum. If your question includes
sensitive data, you may send it instead to
genom...@soe.ucsc.edu.