download Vertebrate Multiz Alignment & Conservation (100 Species)

[Paula Beati]

Hello,

I want to download phastConsElements100way (GRCh37/hg19) in the format described by this schema
http://genome.ucsc.edu/cgi-bin/hgTables?db=hg19&hgta_group=compGeno&hgta_track=cons100way&hgta_table=phastCons100way&hgta_doSchema=describe+table+schema

But I can't find the way.
Is it possible? Can you provide me with any link or instructions?

Thanks in advance,

Paula

[Jairo Navarro Gonzalez]

Hello Paula,

Thank you for using the UCSC Genome Browser and your inquiry.

You can download the phastCons scores from our download server for hg19:

http://hgdownload.soe.ucsc.edu/goldenPath/hg19/phastCons100way/

The file is in bigWig format, and you use our bigWigToBedGraph or bigWigToWig utilities to convert the bigWig file to a plain text format for local processing. You can download these utilities for your system type (Mac or Linux) here: http://hgdownload.soe.ucsc.edu/admin/exe/. As a reminder, you can run our utilities without any arguments to print the usage statement. 

$ bigWigToWig
bigWigToWig - Convert bigWig to wig.  This will keep more of the same structure of the
original wig than bigWigToBedGraph does, but still will break up large stepped sections
into smaller ones.
usage:
   bigWigToWig in.bigWig out.wig
options:
   -chrom=chr1 - if set restrict output to given chromosome
   -start=N - if set, restrict output to only that over start
   -end=N - if set, restict output to only that under end
   -udcDir=/dir/to/cache - place to put cache for remote bigBed/bigWigs

Please feel free to search our mailing list archives for further guidance:

https://groups.google.com/a/soe.ucsc.edu/forum/#!forum/genome

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
All messages sent to that address are archived on a publicly-accessible Google Groups forum.
If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Jairo Navarro 
UCSC Genomics Institute

Want to share the Browser with colleagues?
Host a workshop: http://bit.ly/ucscTraining

--

---
You received this message because you are subscribed to the Google Groups "UCSC Genome Browser Public Support" group.
To unsubscribe from this group and stop receiving emails from it, send an email to genome+un...@soe.ucsc.edu.
To post to this group, send email to gen...@soe.ucsc.edu.
Visit this group at https://groups.google.com/a/soe.ucsc.edu/group/genome/.
To view this discussion on the web visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome/CAKQtPMvbaKya4PRJf67GSC%2BZmbwzkQfvyzJD7CSo5oW%2BLD-vcQ%40mail.gmail.com.
For more options, visit https://groups.google.com/a/soe.ucsc.edu/d/optout.