Alignment Doubt

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Apr 27, 2017, 2:17:36 PM4/27/17

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Dear UCSC Genome Informatics Group,

I've done several alignments using BLAT and have some doubts about the results I've seen.

Basically, I would like to know why when I align the sequence below to the human genome no matches were found

>BP2_1697
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGC

but when the alignment is done using the following sequence (that contains the first sequence) matches found

>BP2_2

ATCATGCAAGATTCCCATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCACCA

Shouldn't the first sequence also match to human genome?

Many thanks for your reply.

Best wishes,

Mariana

Mariana Flores-Torres

Consorcio Metabolismo RNA y Vesiculas Extracelulares

Instituto Nacional de Medicina Genomica

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