Visualize amino acids within BED track

[José Manuel Rodríguez]

Hi all,

I am creating a trackHUB for UCSC Genome Browser, and I would like to visualize the amino acids within the tracks like the GENCODE (see attached picture).
I have looked for the documentation how to do it but I don’t find anything.
Is there a way to do it?

Thanks in advance.

Cheers,
J

PS: Sorry, I forgot to add the picture.

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Jose Manuel Rodriguez Carrasco

e-mail: jmrod...@cnio.es

Tlfn:    (+34) 91 732 80 00 ext: 3061

Structural Biology and BioComputing Programme

Spanish National Cancer Center (CNIO)

Spanish National Bioinformatics Institute (INB) - http://www.inab.org -

Address: C/ Melchor Fernandez Almagro 3, Madrid (Spain) ZipCode: 28029

[Steve Heitner]

Hello, José.

You are referring to the “Color track by codons” option in the track controls.  This is a function of a genePred track.  Track hubs support the bigGenePred format.  Please see http://genome.ucsc.edu/goldenPath/help/bigGenePred.html for more information about the bigGenePred format and instructions for creating a bigGenePred track.

Please contact us again at gen...@soe.ucsc.edu if you have any further questions.  Questions sent to that address will be archived in a publicly-accessible forum for the benefit of other users.  If your question contains sensitive data, you may send it instead to genom...@soe.ucsc.edu.

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Steve Heitner
UCSC Genome Bioinformatics Group

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