KSHV genome browser

[Soohwan Oh]

Dear Sir.

I read a post that your team is considering about EBV genome browser. Actually KSHV is also a good one can be uploaded on UCSC browser. Both KSHV and EBV are double strand DNA virus that involve various types of cancers. They belong to gamma herpes virus, have ~150kb genome and their genome have all kind of epigenetic marks too such as human. so if your team made it, it will be great resource for herpes virus community. please consider about this issue and discuss with your team.

Thank you so much for your efforts.

Soohwan


Soohwan Oh, Graduate student
Rosenfeld Lab, HHMI
University of California San Diego
CMM west, Room 345
9500 Gilman Drive,
La Jolla, 92037-0648, USA

[Soohwan Oh]

And also please let me know if you need any help or information for KSHV EBV genome browser. I have pretty good connection to several guys in gamma herpes virus field and if your team decide everyone loves to help.

Soohwan

[Cath Tyner]

Hello Soohwan,

Thank you for your interest in the UCSC Genome Browser! 

Our assembly hub feature allows users to host their genome and related annotations on a publicly-accessible web server and then visualize these within our browser. You can find information about creating assembly hubs on the following help pages:

Public Wiki, Assembly Hubs

Track

​ & Assembly​

 Hub Help

Please review this previously answered mailing list question for additional information on creating and maintaining assembly hubs

​.​

If you do build a publicly accessibly assembly hub, you may request that we add a link 

​to it from ​

our public assembly hubs page.

Another new feature that may interest you is the ability to publicly share sessions.

You can also find many resources in the archive of our public mailing list by searching for the topics you're interested in:

https://groups.google.com/a/soe.ucsc.edu/forum/#!forum/genome

If you are new to the UCSC Genome Browser, you might also be interested in some introductory video tutorials about the browser available from our training page:
http://genome.ucsc.edu/training/index.html
http://www.openhelix.com/ucsc

Please respond to this list if you have further questions!

Thank you again for your inquiry and for using the UCSC Genome Browser. 

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​Enjoy,​

Cath
. . .

Cath Tyner

UCSC Genome Browser, Software QA & User Support

UC Santa Cruz Genomics Institute

UCSC Genome Browser

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