about axtChainNet
CHEN, ZHONGQIANG (John)
Dear Sir/Madam,
I am a research scientist in DuPont Industrial Bioscience. Dr. Jim Kent kindly direct my initial request to this email address. Could you please tell me how to obtain axtChainNet (under http://hgwdev.cse.ucsc.edu/~kent/exe/) ? Thanks a lot!
Regards,
Zhongqiang (John) Chen, PhD,
Bioinformatics Research Scientist
Dupont Industrial Bioscience
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CHEN, ZHONGQIANG (John)
Dear Sir/Madam,
I would much appreciate if you can inform/direct me about obtaining axtChainNet (see below for details) – is it free to use? Thanks a lot!
Regards,
Zhongqiang (John) Chen, PhD,
Bioinformatics Research Scientist
Dupont Industrial Bioscience
From: CHEN, ZHONGQIANG (John)
Sent: Friday, June 02, 2017 6:20 PM
To: 'gen...@soe.ucsc.edu' <gen...@soe.ucsc.edu>
Cc: HE, HONGXIAN <Hongx...@dupont.com>
Subject: about axtChainNet
Dear Sir/Madam,
I am a research scientist in DuPont Industrial Bioscience. Dr. Jim Kent kindly direct my initial request to this email address. Could you please tell me how to obtain axtChainNet (under http://hgwdev.cse.ucsc.edu/~kent/exe/) ? Thanks a lot!
Regards,
Zhongqiang (John) Chen, PhD,
Bioinformatics Research Scientist
Dupont Industrial Bioscience
Jairo Navarro Gonzalez
Hello Zhongqiang,
Thank you for using the UCSC Genome Browser and your question about axtChainNet.
I apologize for the delay in my response.
The axtChainNet file from the link you shared is a zip file containing various utilities from Jim Kent's home directory. The utilities in the .zip file are:
axtChain
axtPretty
chainNet
chainToPsl
lavToAxt
netChainSubset
netFilter
netSyntenic
netToAxt
pslMap
Some of these utilities are not freely available to commercial users, such as axtChain, and will require a source code license. For information about commercial licensing of the Genome Browser source code, see http://genome.ucsc.edu/license/. We also recommend you download these utilities from our download server to ensure you have the most recent utilities.
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
All messages sent to that address are archived on a publicly-accessible Google Groups forum.
If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Jairo Navarro
UCSC Genomics Institute
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