Exon Information

[Pratyajit Mohapatra]

Good Morning,

I am trying to look for the data which contains exon start and end points of drosophila melanogaster. However, I could not find the raw file in the downloads section. Can you please help me a way out to find the exon information from ucsc genome browser. I need all the exon data across the fly genome.

Thank you,

Pratyajit Mohapatra

Graduate Student

Department of Physiology and Neurobiology

University of Connecticut

Storrs, CT 06269-3156

[Luvina Guruvadoo]

Hello Pratyajit,

Thank you for your question. You can retrieve a list of exon coordinates for drosophila melanogaster using our Table Browser:

1. Navigate to the Table Browser.

2. Make the following selections:

clade: Insect

genome: D. melanogaster

assembly: (select an assembly)

group: Genes and Gene Predictions

track: RefSeq Genes

table: refGene

output format: selected field from primary and related tables

output file: enter a file name to save your results, or leave blank to display output in the web browser

3. Click "submit".

4. On the following page, select name, exonStarts, exonEnds, and any other appropriate fields you would like in your output.

5. Click "get output".

If you would like more information on the Table Browser, please refer to our User's Guide.

If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Regards,

Luvina

--

Luvina Guruvadoo
UCSC Genome Browser
http://genome.ucsc.edu

--