Do you have Ensemble Regulatory Build in hgtables?

[Emma Rath]

Hi,

At https://genome.ucsc.edu/cgi-bin/hgTables, I would like to obtain the Ensemble Regulatory Build annotation (http://asia.ensembl.org/info/genome/funcgen/regulatory_build.html). It has names such as ENRS0000000123.
I searched your website and found indications that you have integrated this (https://genome.ucsc.edu/goldenPath/help/examples/hubExamples/templatePage.html, http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&hubUrl=http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt&g=hub_20163_ProjectedSegments).

However, I am unable to find Ensemble Regulatory Build at https://genome.ucsc.edu/cgi-bin/hgTables. I mainly looked under group="Regulation". I am using assembly "Feb. 2009 (GRCh37.hg19)".

Many thanks,
Emma


Emma Rath | Bioinformatics Research Assistant/Research Officer
Kinghorn Centre for Clinical Genomics
Garvan Institute of Medical Research
The Kinghorn Cancer Centre, 370 Victoria Street, Darlinghurst, NSW 2010
M: + 61 (0) 408 084 898 | E: e.r...@garvan.org.au
www.garvan.org.au
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[Chris Villarreal]

Dear Emma Rath,

Thank you for your question about the UCSC Genome Browser. The linkhttp://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&hubUrl=http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt&g=hub_20163_ProjectedSegments is a hub. What you will have to do is click on the link and navigate to hgTables while the hub is loaded in the browser. When the hub is loaded and you're in hgTables you can find the Ensembl Regulatory Build by changing your group to the first option, labeled "Ensembl Regulatory Build." From there you will see the various tracks contained in the hub. For more information about public hubs, visit our Track Hub Help Page and visit our Public Hubs listing by navigating to the main menu > My Data > Track Hubs > Public Hubs.

Here is an additional link about the Ensembl Regulatory Build Now Available in the Genome Browser.

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

-Chris V
UCSC Genome Browser

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