Lots of overlay multiple track setting not works?

[Shicheng Guo]

Dear Sir/Madam,

I am trying to show my own hub/track with bigwig format. However, I found some of paraters are not working, such as browser hide? Is this truth or some wrong of me?

Thanks. 

​track KidneyMethylome

container multiWig

browser position chr1:58206329-58226061

browser hide all

alwaysZero on

shortLabel KidneyMethylome

longLabel KidneyMethylome

smoothingWindow 16

windowingFunction mean

maxHeightPixels 100:50:30

type bigWig

viewLimits 0:160

visibility full

aggregate transparentOverlay

showSubtrackColorOnUi on

windowingFunction mean

priority 1.2

configurable on

autoScale on

dragAndDrop subtracks

​

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Shicheng Guo, Ph.D.
Department of Bioengineering
University of California at San Diego
9500 Gilman Drive, PFBH403, La Jolla, CA 92093
Email: sc...@ucsd.edu
Phone: 281-685-5882
office:  858-822-3635

Home: 832-538-7052

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[Chris Villarreal]

Dear Shicheng Guo,

Thank you for your question about the UCSC Genome Browser. The "browser hide" line will not work in a track hub. It looks like you want to set the browser to open chr1:58206329-58226061 with specific track settings? A good solution would be to create a session with the desired settings and then link to that session. Here is a link to our Sessions user guide:https://genome.ucsc.edu/goldenPath/help/hgSessionHelp.html.

You may also want to look into using URL parameters to load your hub and set certain Genome Browser settings such as, setting the genomic position and hiding or displaying certain tracks. You can find more information on these URL parameters here:http://genome.ucsc.edu/goldenPath/help/customTrack.html#SHARE. I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

-Chris V
UCSC Genome Browser

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