mappability file for hg38

[Bogdan Tanasa]

Dear all,

please could you let me know where I could obtain  mappability file for hg38, or how could I generate it. I would need it to use for CNV calling in order to normalize germline and tumor samples. Many thanks,

-- bogdan

[Cath Tyner]

Hello Bogdan

​!​

Thanks for asking about

​​

hg38 mappability files. Please this previously answered mailing list question, which explains that the files are not available for hg38

​.​

​As mentioned in the previously answered question, it would be best to direct questions or requests related to current and future mappability data to encod...@lists.stanford.edu.

​

I did find a related Biostars question that may be helpful:
https://www.biostars.org/p/181014/

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​Enjoy,​

Cath
. . .

Cath Tyner

UCSC Genome Browser, Software QA & User Support

UC Santa Cruz Genomics Institute

UCSC Genome Browser

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