human chain file for hg38

[Vinayak Kulkarni]

Dear UCSC folks,

In the past I have used the file http://hgdownload.cse.ucsc.edu/goldenpath/hg19/vsSelf/hg19.hg19.all.chain.gz and it's been very very useful for my analysis. Do you have a similar file for hg38?

Many thanks,

Vinayak.

[Luvina Guruvadoo]

Hello Vinayak,

Thank you for contacting us. The self alignment files for hg38 are now available on our downloads server:
http://hgdownload.soe.ucsc.edu/goldenPath/hg38/vsSelf/

If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

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Luvina Guruvadoo
UCSC Genome Bioinformatics Group

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[Vinayak Kulkarni]

Thank you Luvina. This is great. Just what I wanted. 

Vinayak. 

Sent from my iPhone