hg38 30-way alignment

[Hardin, Aaron]

Dear UCSC genome team,

I saw on the wiki that there is a new 30-way alignment http://genomewiki.ucsc.edu/index.php/Hg38_30-way_conservation_alignment. However, I don’t see it in the http://hgdownload.cse.ucsc.edu/goldenpath/hg38/ folder. Is there another place I should be looking?

Thanks!

Aaron Hardin, Ph.D.

NIH IRACDA Postdoctoral Fellow

Ahituv Lab, UCSF

[Brian Lee]

Dear Aaron,

Thank you for using the UCSC Genome Browser and your question about the hg38 30-way alignment.

The track is due to be released in the near future, you can in the meantime look at the data on our test server (please note that on our test server data is subject to change as it may be under going review for quality): 

http://genome-test.soe.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=cons30way

Thank you again for your inquiry and using the UCSC Genome Browser. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

All the best,

Brian Lee

UC Santa Cruz Genomics Institute

Training videos & resources: http://genome.ucsc.edu/training/index.html

Want to share the Browser with colleagues?

Host a workshop: http://bit.ly/ucscTraining

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[Hardin, Aaron]

Hi Brian,

Thank you for this information! I tried to download the hg38 multiz30way track in the test server table browser but it is timing out. Is there an rsync location I can access to transfer the .maf files?

Aaron

[Brian Lee]

Dear Aaron,

Thank you for your question about trying to download the new 30-way alignment data.

When our data is still in the pre-release test environment we do not create links for download similar to how we do when it has passed a final quality review. This may be for the best as the data is subject to change until we release it. While you can preview the data on the test server, if you want to download the entire file you will need to wait until it is released, likely in the coming weeks. We will be sending an email to the UCSC Genome Browser Announcements List when it is released (Subscribe: Email genome-announce+subscribe@soe.ucsc.edu ).

Thank you again for your inquiry and for using the UCSC Genome Browser. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

All the best,

Brian Lee
UC Santa Cruz Genomics Institute

Training videos & resources: http://genome.ucsc.edu/training/index.html
Want to share the Browser with colleagues?
Host a workshop: http://bit.ly/ucscTraining